PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g00210.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 285aa    MW: 32623 Da    PI: 6.7958
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g00210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.5e-082302632255
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +yp+ +++  LA++ gL+++qV +WF N+R ++
  Vang09g00210.1 230 WPYPTDADKVALAEWSGLEQKQVNNWFINQRKRH 263
                     69*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.3E-123983IPR005540KNOX1
PfamPF037902.2E-144180IPR005540KNOX1
SMARTSM012563.9E-2193144IPR005541KNOX2
PfamPF037913.6E-2398143IPR005541KNOX2
SMARTSM011885.2E-5183204IPR005539ELK domain
PROSITE profilePS512139.428183203IPR005539ELK domain
PfamPF037897.9E-8185204IPR005539ELK domain
PROSITE profilePS5007111.969203266IPR001356Homeobox domain
SuperFamilySSF466898.13E-18205276IPR009057Homeodomain-like
SMARTSM003892.4E-10205270IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-24208267IPR009057Homeodomain-like
CDDcd000862.17E-11219265No hitNo description
PfamPF059201.8E-14223262IPR008422Homeobox KN domain
PROSITE patternPS000270241264IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MENSLYNFYY STTYTDRSTT MAPPPPIKAV FGKEEDVSKA LRDKVASHPL FPHLLHAYID  60
CHKVGAPQDM ADLFEGIKEE HSGVCQISES KSYHSFLGAD PELDDFMVTF CDLLVKYKSD  120
LSRPFNEATM FLSHMETQLH SICNDLAVSD NTLPQPAVGG SSGKDSKEGI KRIESKKTYE  180
VEEVKDNLLS RYSGYITNLK HEFSRKKKKE KLPKEAKKIL LAWWNIHFKW PYPTDADKVA  240
LAEWSGLEQK QVNNWFINQR KRHWKASEEM QVTILDGLYG PLHE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209RKKKKE
2204210RKKKKEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g00210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-127AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027904973.10.0homeobox protein knotted-1-like 6
TrEMBLA0A0S3RFT40.0A0A0S3RFT4_PHAAN; Uncharacterized protein
STRINGGLYMA04G35850.21e-137(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.12e-66KNOTTED-like from Arabidopsis thaliana 2