PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g00270.1
Common NameLR48_Vigan04g066100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 320aa    MW: 35743.2 Da    PI: 6.3579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g00270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++++++G g+W+++++  g+ R++k+c++rw +yl
   Vang09g00270.1 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding46.68e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
   Vang09g00270.1  67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-26664IPR009057Homeodomain-like
PROSITE profilePS5129417.994961IPR017930Myb domain
SuperFamilySSF466895.24E-2912108IPR009057Homeodomain-like
SMARTSM007174.2E-121363IPR001005SANT/Myb domain
PfamPF002491.9E-141461IPR001005SANT/Myb domain
CDDcd001676.31E-111761No hitNo description
PROSITE profilePS5129424.35362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2565116IPR009057Homeodomain-like
SMARTSM007172.4E-1366114IPR001005SANT/Myb domain
PfamPF002497.5E-1467111IPR001005SANT/Myb domain
CDDcd001673.10E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPATHKPLV SAEDNIIKEE KDTIETPSVL LPASQGILVS SQDSPLLVNN SNYYDGLFNV  180
TETSREVFVS KNALDPLSSY FEFQMGYDSS VNPMRQFDQN QVGTNSSYGF SSLPCLNSSD  240
HHGNVSVAEF SDNNSASKIS SLLKESSSNS SGMSVYPGAG CQMMENAGFS SWECDNKIDP  300
LLQFQVNVVK SQEFKTTEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g00270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421116.10.0PREDICTED: protein ODORANT1-like
SwissprotQ8LPH63e-83MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A0L9UCK10.0A0A0L9UCK1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RG640.0A0A0S3RG64_PHAAN; Uncharacterized protein
STRINGXP_007138025.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-85myb domain protein 86
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]