PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g00820.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 586aa    MW: 67527 Da    PI: 8.6163
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g00820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-17308354148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd ll+++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
   Vang09g00820.1 308 KGHWTIEEDGLLIQLVEQYGLRKWSHIAKILP-GRIGKQCRERWHNHL 354
                      789*****************************.*************97 PP
2Myb_DNA-binding54.23.3e-17360402145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W  eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
   Vang09g00820.1 360 KDTWNSEEDKILIEAHAEVGNK-WAEIAKRLP-GRTENSIKNHWN 402
                      678*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.678303358IPR017930Myb domain
SuperFamilySSF466894.67E-31306401IPR009057Homeodomain-like
SMARTSM007178.6E-15307356IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-27309361IPR009057Homeodomain-like
CDDcd001677.41E-14311354No hitNo description
PfamPF139213.4E-18311368No hitNo description
SMARTSM007177.1E-17359407IPR001005SANT/Myb domain
PROSITE profilePS5129421.273359409IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-22362407IPR009057Homeodomain-like
CDDcd001672.15E-12362405No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MRKLGLWADR VTCMVRERVL GMGEERFKVK KVASWRVKQG LVGRRMTHMR KTRKRTRRMK  60
AATPMRMKRR RRWPVVEAAT TTNGGGSDDE EENYSIQCTK SSKVHCNISS QTRSFETPLL  120
FCSLLTHISM DIETLFKETF VPQPLQESCM KDMIPLGNPL SQECLQDFHH IDQFHFNVPS  180
SNNSIIQNPT FDAFDNFTFT GSSPALDVYE SKPFVENRHT HVMDNFLYGN YNLILPQRNV  240
ELDLMVADQS FLPFSPQEIK PSNFSLPDEV SCISPMNYYK RIGLNKNNKS YPTTRRTSKV  300
RKKSNTVKGH WTIEEDGLLI QLVEQYGLRK WSHIAKILPG RIGKQCRERW HNHLRPDIKK  360
DTWNSEEDKI LIEAHAEVGN KWAEIAKRLP GRTENSIKNH WNATKRRQYS KRKCRSKYPR  420
GTLLQEYIKS LNLDKNPPID YRRKSSANHA IKTSTSKSTA PALPQTASQF SAIELPPDSD  480
FNVVPDFLFG ENLLEEDCSI HSLLDGVPCV PFMDNKNCEG KLQCDPMMEG MQHFEYGGIE  540
CFAAINGDEN HVETDMQPEM LEVEVKKELD LVEMISQINS ETFHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-423054084107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14354RRMTHMRKTRKR
24957RKTRKRTRR
35271RKRTRRMKAATPMRMKRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g00820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421250.10.0PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L28e-91MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A0L9UBU50.0A0A0L9UBU5_PHAAN; Uncharacterized protein
STRINGXP_007138059.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-93myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]