PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g01250.2
Common NameLR48_Vigan04g055500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 208aa    MW: 22452.3 Da    PI: 10.0286
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g01250.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-071371147
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     l++ + ++ G+g+W+ I+r   k+Rt+ q+ s+ qky
   Vang09g01250.2  1 LFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 37
                     5788999*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001673.22E-4138No hitNo description
SuperFamilySSF466892.33E-9142IPR009057Homeodomain-like
PROSITE profilePS5129412.898142IPR017930Myb domain
TIGRFAMsTIGR015573.6E-10240IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.8E-5237IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
LFLVGLQKVG KGDWRGISRN YVKTRTPTQV ASHAQKYFLR RTNLNRRRRR SSLFDITTDS  60
VSTTPMEEGQ IQYQDNVSLV HPMYPVTPEG SNMNGFSKLP MYSKDIGTGA MSAQAGNPMK  120
ILTLGQGNVE QNGPSTKLVC TTAPNIVPDY KGSTASDITA TSLSSLDPPT LSLGLSLSSS  180
QRQTSSIHSA FHSLSCFNNG DSFITVA*
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g01250.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422359.11e-153PREDICTED: transcription factor MYB1R1-like isoform X2
SwissprotQ2V9B07e-33MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A0L9UCS31e-151A0A0L9UCS3_PHAAN; Uncharacterized protein
STRINGXP_007138137.11e-110(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.21e-24MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]