PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g01270.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family E2F/DP
Protein Properties Length: 377aa    MW: 42742.8 Da    PI: 8.9427
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g01270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.51.1e-231277171
         E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                    rk+ksL+ll+++fl+l+++   + + l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++wkg
  Vang09g01270.1 12 RKQKSLGLLCTNFLRLYNRDGVRLIGLDDAASRL---GV--ERRRIYDIVNVLESVGVLARKAKNQYTWKG 77
                    79*****************999************...**..****************************98 PP
2E2F_TDP76.13.4e-24147226171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     r+eksL lltq+f+kl+ +s+ ++++l+e+ak L+ +     +++k+RR+YDi+NVL+++nliek     ++k+++rw g
  Vang09g01270.1 147 RREKSLALLTQNFVKLFICSSIEMISLDEAAKLLLGNantsIMRTKVRRLYDIANVLSSMNLIEKthttnTRKPAFRWLG 226
                     689*******************************999999999*************************999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.5E-26879IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.77E-161175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.1E-271277IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.6E-201377IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-23143226IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-29147226IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.3E-19149226IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.01E-12149227IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSTSSTHHTY SRKQKSLGLL CTNFLRLYNR DGVRLIGLDD AASRLGVERR RIYDIVNVLE  60
SVGVLARKAK NQYTWKGFSA IPEALQELKE DGLKENPGSF DDSNDSAKVS DDEDEEETSP  120
IVNTESQNDK EIPDSTALGL SSKNENRREK SLALLTQNFV KLFICSSIEM ISLDEAAKLL  180
LGNANTSIMR TKVRRLYDIA NVLSSMNLIE KTHTTNTRKP AFRWLGWRGK AWSESVDLAH  240
NSNFNEPGKR KFGTDITNTS FKRSKTDFLL DGLTCKMQNQ QENISYRVQL DRSNFEKDAK  300
QTSKGYQFGP FAPAYVPKVG TSENNSGNQV HDWDSLAQVH RPQYQNQALR DLFSHYMDAW  360
KSWYSEVAEK KPTKTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-38112183228Transcription factor E2F8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g01270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419843.10.0PREDICTED: E2F transcription factor-like E2FE isoform X1
SwissprotQ8LSZ41e-128E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLA0A0S3RGB40.0A0A0S3RGB4_PHAAN; Uncharacterized protein
STRINGXP_007138128.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-130DP-E2F-like 1
Publications ? help Back to Top
  1. Chandran D, et al.
    Atypical E2F transcriptional repressor DEL1 acts at the intersection of plant growth and immunity by controlling the hormone salicylic acid.
    Cell Host Microbe, 2014. 15(4): p. 506-13
    [PMID:24721578]
  2. Wang Z, et al.
    Del1 Knockout Mice Developed More Severe Osteoarthritis Associated with Increased Susceptibility of Chondrocytes to Apoptosis.
    PLoS ONE, 2016. 11(8): p. e0160684
    [PMID:27505251]
  3. Heyman J,Polyn S,Eekhout T,De Veylder L
    Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
    Plant Physiol., 2017. 175(1): p. 303-313
    [PMID:28698355]