PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang09g02300.1

Common Name

LR48_Vigan10g234000

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 231aa MW: 26102.8 Da PI: 8.0928

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang09g02300.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.6	1.4e-05	37	89	1	54
CHHHHHHHHHHHHHHHHHHHHHHH.CTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLr.ellPkaskapskKlsKaeiLekAveYIksL 54 +r + erE+ R+++N+ f L +l+ ++ + + + Ka+iL++ ++ +k+L Vang09g02300.1 37 KRIRKAEREKEKREQLNELFLGLAaTLVVTD--LKEQNNGKASILRESIRLLKDL 89 577889************99972555665..49999**********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.671	36	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.23E-4	37	89	No hit	No description
SuperFamily	SSF47459	1.07E-9	37	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-5	37	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MMGSETSATV VEKLYNSQDL SRKRSCSNKQ KQEKFPKRIR KAEREKEKRE QLNELFLGLA 60 ATLVVTDLKE QNNGKASILR ESIRLLKDLF SQIESLKKDS VSLLSETHYV TMEKNEMVEE 120 NCVLKSQIEK LAGEIEARVV QCRHNLMNPF PEPEKITEFS GENLQLSSTE GAVQQGHAVL 180 VVPISTNHGP HNVVEQIPKP KSTITKPHPR YPTQMDSWPL QLLAEQPTSN *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang09g02300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439297.1	1e-165	PREDICTED: transcription factor bHLH47-like isoform X1
Swissprot	Q9SN74	1e-44	BH047_ARATH; Transcription factor bHLH47
TrEMBL	A0A0L9VND8	1e-164	A0A0L9VND8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RGF6	1e-164	A0A0S3RGF6_PHAAN; Uncharacterized protein
STRING	GLYMA05G01150.1	1e-74	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8223	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-38	bHLH family protein

Publications ? help Back to Top
Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]