PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g02360.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 357aa    MW: 40672.9 Da    PI: 7.0333
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g02360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-1756103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd +lv +++++G+g+W+++++  g+ R+ k+c++rw +yl
   Vang09g02360.1  56 KGPWTPEEDIILVSYIQEHGPGNWRLVPSNTGLMRCSKSCRLRWTNYL 103
                      79********************************************97 PP
2Myb_DNA-binding48.22.5e-15109154148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   Vang09g02360.1 109 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 154
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-2447106IPR009057Homeodomain-like
PROSITE profilePS5129425.11451107IPR017930Myb domain
SuperFamilySSF466892.74E-3053150IPR009057Homeodomain-like
SMARTSM007177.3E-1455105IPR001005SANT/Myb domain
PfamPF002497.3E-1656103IPR001005SANT/Myb domain
CDDcd001672.17E-1158103No hitNo description
Gene3DG3DSA:1.10.10.601.4E-24107159IPR009057Homeodomain-like
SMARTSM007174.0E-15108156IPR001005SANT/Myb domain
PROSITE profilePS5129419.216108158IPR017930Myb domain
PfamPF002499.5E-14109154IPR001005SANT/Myb domain
CDDcd001674.44E-10111153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
PCLCVSNTPF YRNPQGIQEQ NKKKEQEKKS ITIYTFLFPL YQMGRPPCCD KIGIKKGPWT  60
PEEDIILVSY IQEHGPGNWR LVPSNTGLMR CSKSCRLRWT NYLRPGIKRG NFTDHEEKMI  120
IHLQALLGNR WAAIASYLPQ RTDNDIKNYW NTHLKKKLKK LQSEEGDDEG NNYEKGNSCS  180
QLKGQWERRL QTDIHMAKQA LCEALSLDKP TQIFPETKLP STFSHPTSPN KTSSLYASST  240
ENIARLLDNW MKKSPNKTET NCSMSNMVTT GSSSSEGTQS TVTCTQDQFD SLWSFKYERS  300
QSVSAEENTN LVESKPNVET QVPLMLLENW LFEDGAPQCN EDLMNMSLEE TADGLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-25561584105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-25561584105C-Myb DNA-Binding Domain
1msf_C3e-25561584105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g02360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438825.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-121MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0L9VN260.0A0A0L9VN26_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RG230.0A0A0S3RG23_PHAAN; Uncharacterized protein
STRINGXP_007138187.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-103myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]