PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g02540.1
Common NameLR48_Vigan04g049900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 260aa    MW: 28891.8 Da    PI: 9.2593
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g02540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.82.4e-37129743129
             NAM  43 ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      P dLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++ vg+kktLvfykgrapkgektdWvmheyrle
  Vang09g02540.1  12 VPMDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFR-GKSPVGMKKTLVFYKGRAPKGEKTDWVMHEYRLE 97 
                     599***888999****************************************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.2281121IPR003441NAC domain
SuperFamilySSF1019411.11E-4213121IPR003441NAC domain
PfamPF023653.6E-172196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MENVSVLCKE EVPMDLPWKA KMGEKEWYFF CVRDRKYPTG LRTNRATEAG YWKATGKDKE  60
IFRGKSPVGM KKTLVFYKGR APKGEKTDWV MHEYRLEGKF SVPNLPKTAK NEWVICRVFQ  120
KSSGGKKTHI DGIMMMDSYG NELGSSALPP LTDSSPSIGN TKALSVTEQA PPTLPSPGSS  180
NHYLRSFFNN HGKGSFLRNG FEPETEMVSV SQETGVSTEV NAETSSVVSN LEMGNRLFEN  240
RNNPIGSAAP VDLASLWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-341312759171NO APICAL MERISTEM PROTEIN
1ut4_B6e-341312759171NO APICAL MERISTEM PROTEIN
1ut7_A6e-341312759171NO APICAL MERISTEM PROTEIN
1ut7_B6e-341312759171NO APICAL MERISTEM PROTEIN
4dul_A6e-341312759171NAC domain-containing protein 19
4dul_B6e-341312759171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g02540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0287731e-156DQ028773.1 Glycine max NAC domain protein NAC5 (NAC5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420852.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ22e-93NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0L9UC630.0A0A0L9UC63_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RG880.0A0A0S3RG88_PHAAN; Uncharacterized protein
STRINGXP_007138169.11e-153(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-95NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]