PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g03680.1
Common NameLR48_Vigan04g033300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 166aa    MW: 18501.1 Da    PI: 4.4909
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g03680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB80.22.8e-2520103386
           NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                     ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+r+ti+++ +l al+ lGf dy+e++ + 
  Vang09g03680.1  20 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGDYIEEVYAA 103
                     6899***************************************************************************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-3917149IPR009072Histone-fold
SuperFamilySSF471133.69E-3621152IPR009072Histone-fold
PfamPF008082.2E-222388IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
LTLPPLFIRM EPMDIVGKAK EDASLPKATM TKIIKEMLPP DVRVARDAQD LLIECCVEFI  60
NLVSSESNEV CNKEERRTIA PEHVLKALGV LGFGDYIEEV YAAYEQHKLE TMQDSLKGAK  120
WSNRAEMTEE EALAEQQRMF AEARARMNGG AITSKQPDAD QSLES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-352114412133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g03680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX8699480.0JX869948.1 Phaseolus vulgaris TATA-binding protein-associated phosphoprotein Dr1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494002.11e-113protein Dr1 homolog
RefseqXP_017422009.11e-113PREDICTED: protein Dr1 homolog
SwissprotP495929e-90NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A0L9UB341e-111A0A0L9UB34_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TJR51e-111A0A1S3TJR5_VIGRR; protein Dr1 homolog
STRINGXP_007138352.11e-110(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.24e-92nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]