PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g03790.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 244aa    MW: 28317.2 Da    PI: 6.8911
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g03790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP385.8e-12113141331
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaar 31 
                     gk+drhski+T++g+RdRR+Rls+++a+r
  Vang09g03790.1 113 GKRDRHSKISTAGGLRDRRMRLSLDVARR 141
                     89*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.5E-11113141IPR005333Transcription factor, TCP
PROSITE profilePS513698.76114202IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.434138155IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MQSQTSDTFP SHCENETISC YDPAFYYTRP FSIDSESNPT WKQENNTDLP PLSFFHFPSP  60
PFEDSHISLQ QHHDFLLQFH HNPPPQNPDP QPVSLSVETS AKKNIQTPRK RLGKRDRHSK  120
ISTAGGLRDR RMRLSLDVAR RERARERARE RTREKMRSRG LAEESKPCRE EENQNLIQLG  180
SWKPSETGEE FVTKSHGLHP SLDVITEGKE HSYHAKEHDD DDSLVILSKW SPSLIFNNYG  240
FSHE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142154RARERARERTREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g03790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420178.13e-88PREDICTED: transcription factor TCP18-like
TrEMBLA0A0S3RH299e-87A0A0S3RH29_PHAAN; Uncharacterized protein
STRINGXP_007138340.19e-70(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4079522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-07TCP domain protein 12