PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g05860.1
Common NameLR48_Vigan04g008900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 245aa    MW: 27198.4 Da    PI: 10.7811
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g05860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18110143134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+ C+ttkTplWR gp g+k+LCnaCG+++rk +
  Vang09g05860.1 110 CADCHTTKTPLWRTGPTGPKSLCNACGIRQRKAR 143
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-17104155IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.967104140IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-12107144No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15108144IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.82E-12109139No hitNo description
PROSITE patternPS003440110135IPR000679Zinc finger, GATA-type
PfamPF003201.9E-16110143IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAQKIVCFGG SWDHQAEKIE NRSDLQLRLW KKEECDNLQG EDSSTNWMPS KMRMVRKIMI  60
SDQTGSHMAD ISNSKKMKAK EKNPTLSQLV TDDSNYNSSS NKNSLTARVC ADCHTTKTPL  120
WRTGPTGPKS LCNACGIRQR KARRATAAAA TKANGTNKLE AKKSEVKKGK KLHSKGKKPK  180
TGGAPVLVKK KRKAAKHRKK FGAFEDLSVR FQQVFPQDEK EAAILLMALS HGLLHGFPTD  240
RYIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176192KKPKTGGAPVLVKKKRK
2188199KKKRKAAKHRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g05860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420950.10.0PREDICTED: GATA transcription factor 21-like
TrEMBLA0A0L9UB101e-180A0A0L9UB10_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RHZ81e-180A0A0S3RHZ8_PHAAN; Uncharacterized protein
STRINGXP_007138732.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-17GATA family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]