PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g06240.1
Common NameLR48_Vigan04g013200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 175aa    MW: 20203.3 Da    PI: 8.9109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g06240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-161763248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+W+ +Ed++l+++v++ G g+W+  +++ g++R++++ck+rw++yl
   Vang09g06240.1 17 GAWSSDEDQILLKYVELTGEGNWTDLPERAGLKRCGESCKHRWLNYL 63
                     89*******************************************97 PP
2Myb_DNA-binding41.92.2e-1370114248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +++  +E+el+++++k+lG++ W+ Ia +++ gR++ ++k +w++yl
   Vang09g06240.1  70 DNFLWDEQELIIRLHKLLGNR-WSMIAGRLP-GRSEDEIKKYWNTYL 114
                      667789***************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.0441163IPR017930Myb domain
SMARTSM007173.5E-121565IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-2516110IPR009057Homeodomain-like
PfamPF002496.8E-151763IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-181770IPR009057Homeodomain-like
CDDcd001671.62E-81863No hitNo description
PROSITE profilePS5129421.68164118IPR017930Myb domain
SMARTSM007171.7E-1168116IPR001005SANT/Myb domain
PfamPF002491.2E-1170114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-1971118IPR009057Homeodomain-like
CDDcd001671.84E-875114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
LHFELPMEPK NCCEKEGAWS SDEDQILLKY VELTGEGNWT DLPERAGLKR CGESCKHRWL  60
NYLKPTIPRD NFLWDEQELI IRLHKLLGNR WSMIAGRLPG RSEDEIKKYW NTYLSKKVEE  120
KKKVVRSSSM SSVESPWLSE NEHAMNSMES PKPVIVRPKV VRLTKPVVAR LVGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-201611827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g06240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-142AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421408.11e-120PREDICTED: transcription factor MYB114-like
SwissprotP102902e-44MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A0L9UBM91e-119A0A0L9UBM9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RHD21e-119A0A0S3RHD2_PHAAN; Uncharacterized protein
STRINGXP_007138671.19e-85(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-43myb domain protein 3
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  5. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  6. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  7. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  8. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]