PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g06920.1
Common NameLR48_Vigan04g008500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 124aa    MW: 14039.3 Da    PI: 10.3136
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g06920.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.21.2e-123312856
                    HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56
                    ++++ LA++l+L+ rqV vWFqNrRa+ k
  Vang09g06920.1  3 AQKQALADQLNLKHRQVEVWFQNRRARTK 31
                    689************************98 PP
2HD-ZIP_I/II84.61.3e-273662790
     HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
                     +K++la +L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eLr++
  Vang09g06920.1  3 AQKQALADQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQ 66
                    69***********************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.762133IPR001356Homeobox domain
CDDcd000864.57E-7234No hitNo description
Gene3DG3DSA:1.10.10.609.5E-11331IPR009057Homeodomain-like
PfamPF000465.1E-10331IPR001356Homeobox domain
SuperFamilySSF466892.69E-10342IPR009057Homeodomain-like
PROSITE patternPS000270831IPR017970Homeobox, conserved site
SMARTSM003407.1E-213376IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-93367IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MQAQKQALAD QLNLKHRQVE VWFQNRRART KLKQTEVDCE FLKKCCEKLT DENLRLKKEL  60
QELRAQKIGP KPLYIQLSKA TTLSICSSCE KELKPNEGKK GGISDVVRNS SQKLQNSVGV  120
KGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12533RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g06920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-160AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421312.16e-82PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466025e-38HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0L9UBF31e-80A0A0L9UBF3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RHK01e-80A0A0S3RHK0_PHAAN; Uncharacterized protein
STRINGXP_007138743.12e-77(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-40homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  4. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]