PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g07070.1
Common NameLR48_Vigan04g006400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 124aa    MW: 13899.1 Da    PI: 4.9353
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g07070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47e-052183955
                    TCHHHHHHHHHHHHHHH CS
             HLH 39 sKaeiLekAveYIksLq 55
                    +Ka+i + A++YI++L+
  Vang09g07070.1  2 DKASIIKDAIDYIQHLH 18
                    8**************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-5132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.613117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-7133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDKASIIKDA IDYIQHLHEQ EKIIQAEIMN LESGMPNKSS SSYDFEQEQL PVVLSKRTDT  60
MVKLCEVFES LKLKIITANI TSFSGRLLKT VFIEANGEDK YHLEIKIQTA IAALNEPLSP  120
MSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang09g07070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-86AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419916.12e-76PREDICTED: transcription factor bHLH35
SwissprotQ2HIV93e-32BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0L9UAY25e-75A0A0L9UAY2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RHT35e-75A0A0S3RHT3_PHAAN; Uncharacterized protein
STRINGXP_007138769.14e-65(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-34bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]