PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g00110.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 151aa    MW: 16711 Da    PI: 7.392
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g00110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer84.31.4e-261058357
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                    k++Y+eCl+NhAaslG++a+DGCgEf+ +        +l+C ACgCHRnFHR+ +
  Vang10g00110.1 10 KTVYRECLRNHAASLGSYATDGCGEFTVD------GGGLQCVACGCHRNFHRKVK 58
                    679************************98......458**************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.1E-221157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-161356IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-201356IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.8091357IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.25E-569110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-1270110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEGGSGEKWK TVYRECLRNH AASLGSYATD GCGEFTVDGG GLQCVACGCH RNFHRKVKYP  60
VGPESPEAMD YGGEGGSKKR FRSKFSADQK EKMLAFAEKL GWKLQRKDLD DEIESEKLVL  120
KTSGKHLNLC EELSFWKSGI CIEESIHIIS *
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g00110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424629.11e-80PREDICTED: zinc-finger homeodomain protein 8
SwissprotQ9SB613e-27ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A0L9UKY91e-79A0A0L9UKY9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QW942e-79A0A0S3QW94_PHAAN; Uncharacterized protein
STRINGXP_007160565.18e-76(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-29homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]