PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang10g00300.1

Common Name

LR48_Vigan05g098900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WOX

Protein Properties

Length: 397aa MW: 45090.8 Da PI: 8.6053

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang10g00300.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.4	4.3e-22	82	141	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ Vang10g00300.1 82 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 141 7***************99************************************97 PP
2	Wus_type_Homeobox	114.5	5.3e-37	81	143	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+ Vang10g00300.1 81 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 143 79***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	9.5E-5	79	146	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.3E-9	82	141	IPR009057	Homeodomain-like
Pfam	PF00046	8.2E-20	82	141	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.05E-12	82	148	IPR009057	Homeodomain-like
CDD	cd00086	2.49E-7	83	143	No hit	No description
PROSITE profile	PS50071	11.451	87	142	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048513	Biological Process	animal organ development
GO:0099402	Biological Process	plant organ development
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MWMVGYNEAA DFTMADYALN GRKLRPLMPR PVSSPNNTPN ANSPCLTRIH HGNDFFSQYH 60 NLASVADQGK REFNPPPVVV SSRWNPTPEQ LRALEELYRR GTRTPSAEQI QQITAQLRRF 120 GKIEGKNVFY WFQNHKARER QKRRRQMESA AEGHHTRDFD GTLEKKDLGA SRTVFEVEQT 180 KNWAPSTNCS TLAKVYYSKS SFVFVLVDEV IKPFFFFLNL GFSLLHHPKE SVSIQRAAKA 240 AVADCRTDGW LQFDEGELQH TRNLMERNAT WHMMQLSCPS PPTVSPHFIN APPTISTASM 300 STTPSVTPRI MDPKLIKTHD LSFFISPNRE NGVIHLSSIN TYTPDDNSVE SQTLQLFPVR 360 NGDESSDNIN HQKETDVSVS AMNAPSQFFE FLPLKN*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MWMVGYNEAA DFTMADYALN GRKLRPLMPR PVSSPNNTPN ANSPCLTRIH HGNDFFSQYH  60
NLASVADQGK REFNPPPVVV SSRWNPTPEQ LRALEELYRR GTRTPSAEQI QQITAQLRRF  120
GKIEGKNVFY WFQNHKARER QKRRRQMESA AEGHHTRDFD GTLEKKDLGA SRTVFEVEQT  180
KNWAPSTNCS TLAKVYYSKS SFVFVLVDEV IKPFFFFLNL GFSLLHHPKE SVSIQRAAKA  240
AVADCRTDGW LQFDEGELQH TRNLMERNAT WHMMQLSCPS PPTVSPHFIN APPTISTASM  300
STTPSVTPRI MDPKLIKTHD LSFFISPNRE NGVIHLSSIN TYTPDDNSVE SQTLQLFPVR  360
NGDESSDNIN HQKETDVSVS AMNAPSQFFE FLPLKN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang10g00300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017423993.1	0.0	PREDICTED: WUSCHEL-related homeobox 1 isoform X1
TrEMBL	A0A0L9UKG1	0.0	A0A0L9UKG1_PHAAN; Uncharacterized protein
STRING	XP_007160532.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2892	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	3e-58	WUSCHEL related homeobox 1

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]