PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g02270.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 335aa    MW: 37866.9 Da    PI: 9.1636
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g02270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF602.9e-191355547
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    +   +qvtfskRr g++KKA+ELSv+C++e a+++fs+  k +
  Vang10g02270.1 13 DPNSKQVTFSKRRSGLFKKAYELSVMCGVELAIVMFSPGKKPH 55
                    56679********************************987755 PP
2SRF-TF66.52.7e-21163207549
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF   5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                     +   +qvtfskRr+g++KKA+ELS+LC+aeva+++fs+ +k y +
  Vang10g02270.1 163 DPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSF 207
                     56679*********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.27E-25175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.516161IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-28160IPR002100Transcription factor, MADS-box
PfamPF003191.6E-221257IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.918151211IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-17153173IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-25154210IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-24155225IPR002100Transcription factor, MADS-box
PfamPF003192.6E-24162207IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-17173188IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-17188209IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRRKIDIAE VKDPNSKQVT FSKRRSGLFK KAYELSVMCG VELAIVMFSP GKKPHSFGHP  60
SVNAVADKFL RKKRTSNVVR ANYVRENDAP NEVDGMERLS QQLFSVEVHI NEEHEKATEL  120
DRREKEQEAS QAQNKELQNS PVLQRMVEDY VDAMEIEITE VKDPNTKQVT FSKRRTGLFK  180
KANELSILCG AEVAIVVFSP GNKPYSFGHP SVDVVADKFL QQESASDVVV KPNVVEGNSS  240
SNDDNIDALN QQLSGVQTQI SEEHKKAVEL DRRKKQQDVT KLTYNKQLQR SYLKVQRKVE  300
DYLDAIEVSE YMLLLAKEPV IGITTQANAK RRKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-141252191MEF2C
5f28_B2e-141252191MEF2C
5f28_C2e-141252191MEF2C
5f28_D2e-141252191MEF2C
6bz1_A2e-14169169MEF2 CHIMERA
6bz1_B2e-14169169MEF2 CHIMERA
6bz1_C2e-14169169MEF2 CHIMERA
6bz1_D2e-14169169MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16673DKFLRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g02270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441125.11e-126PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A0L9VSA01e-125A0A0L9VSA0_PHAAN; Uncharacterized protein
STRINGXP_007160293.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.12e-28AGAMOUS-like 91