PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang10g02310.1

Common Name

LR48_Vigan11g086800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

M-type_MADS

Protein Properties

Length: 178aa MW: 20197.3 Da PI: 9.4759

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang10g02310.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.5	5.4e-21	12	56	4	48
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 ++ rqvtfskRr+g++KKA+ELS+LC+ae+a+++fs ++ y Vang10g02310.1 12 KDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNRPYS 56 56678********************************98776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	9.94E-26	1	74	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-31	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.002	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-23	12	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MGRRKIEIAA VKDPNTRQVT FSKRRTGLFK KANELSILCG AEIAIVVFSI GNRPYSFGHP 60 GVDAVAAKFL EHEIVKSNDV EQNNVEVGDI GRLNQQLLDI EARILVEEKK GLELDQILKQ 120 HQLSQPSQFK QLQDSYLEFQ RRLKDYTDAI EVSECLILLA QEPVVQITKQ VKKRRKN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
1tqe_R	2e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
1tqe_S	2e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_A	2e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_B	2e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_C	2e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_D	2e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_E	2e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_F	2e-18	1	72	1	72	Myocyte-specific enhancer factor 2B
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	175	KKRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang10g02310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017441127.1	1e-127	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A0L9VRY9	1e-125	A0A0L9VRY9_PHAAN; Uncharacterized protein
STRING	XP_007160291.1	2e-98	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2424	29	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	9e-34	AGAMOUS-like 29

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]