PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang10g03030.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 1054aa MW: 116637 Da PI: 8.732

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang10g03030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	89.4	8.1e-28	22	109	8	89
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......k 89 ++++hTkv+gR RRv l+ +caar+F+L+ eLG+++ ++ti WLl+qa+p+i+ +tgt+ s++ ++ sssss s+sss+ + Vang10g03030.1 22 KKDRHTKVNGRERRVLLPPLCAARIFQLTCELGYKTHGETIGWLLRQAEPSIISATGTGISPS-IVDLTSSSSSPSTSSSSlpilplpS 109 79********************************************************88888.3322333333332222223444321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.7E-24	21	118	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	21.667	22	76	IPR017887	Transcription factor TCP subgroup
Gene3D	G3DSA:3.40.50.300	3.5E-47	553	786	IPR027417	P-loop containing nucleoside triphosphate hydrolase
CDD	cd03213	1.84E-73	555	781	No hit	No description
PROSITE profile	PS50893	17.06	557	798	IPR003439	ABC transporter-like
SuperFamily	SSF52540	1.06E-41	558	794	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00005	6.6E-25	577	726	IPR003439	ABC transporter-like
SMART	SM00382	1.5E-9	583	784	IPR003593	AAA+ ATPase domain
PROSITE pattern	PS00211	0	698	712	IPR017871	ABC transporter, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity

Sequence ? help Back to Top
Protein Sequence Length: 1054 aa Download sequence Send to blast
MTSTTPVSLK GSNTKLPPLR AKKDRHTKVN GRERRVLLPP LCAARIFQLT CELGYKTHGE 60 TIGWLLRQAE PSIISATGTG ISPSIVDLTS SSSSPSTSSS SLPILPLPSQ DNNNVVVGQH 120 ANSVHVSIDN EINSKETFLP LDFDVFSNFN VEFSAGEIEM LQSLMTRDAD WNGAFNFSKD 180 LTFLTICAQQ MRGDITQRMC TEAEILAYGQ SFAGGKSRSN FLKPNINCNL TSWVNGCEPG 240 WGCKANQKVD IDSTKKDIPV RSLDCLPCCE GFFCPRGLTC MIRSNQRILY ISSNVNVFGC 300 SNFIHLLRIF GLLLKLAHWG LIVLLDNSIR LVEYVNQSIC RYRYQLPPGK PNHTCGGADI 360 WADIASSSEA GLCFLLIIIY NCSDQVLATR ERRQASTRER AVQSVRETQA REKWKSAKDI 420 AKKHAVGLQS QLSRTFSRKT SKKPELKGFG SKHSDSAIPP AGKGKKKDKN NLSKILNDIE 480 QNPDNPEGFN VEIGDKNVKK QAPRGKQLHT QSQIFKYAYG QIEKEKALAE QNKNLTFSGV 540 ISMASDIEIR KRPTIEVAFK DLTLTLKGKN KHLLRCVTGK LYPGRVSAVM GPSGAGKTTF 600 LSALTGKATG CHTTGQVHVN GQESSIRSYK KIIGFVPQDD IVHGNLTVEE NLWFSARCRL 660 PADLPKEEKV LVVERVIESL GLQAIRDSLV GTVEKRGISG GQRKRVNVGL EMVMEPSLLI 720 LDEPTSGLDS SSSQLLLRAL RREALEGVNI CMVLHQPSYT LFKMFDDFIL LAKGGLTVYH 780 GPVNKVEEYF SSMGINVPDR VNPPDYFIDI LEGIVKLSPS LGVTYKQLPV RWMLHNGYPV 840 PMDMLQSVEG MSAPSGEGSS SGAATGGEEE APSFAGELWQ DVKCNVEMKK DILHINFLAS 900 HDLSNRIAAL RSFSLDKLHY WRESSSGMSS LAYFLSKDTV DHFSTVIKPL VYLSMFYFFN 960 NPRSSVIDNY FVLLCLVYCV TGIAYVLAIF LQPGPAQLWS ALLPVVLTLV ATYQNEDDSK 1020 YVKYLSDLCY TKWALEAFVI SNAKRPSYRD GNN*

Sequence ? help Back to Top

Protein Sequence Length: 1054 aa Download sequence Send to blast

MTSTTPVSLK GSNTKLPPLR AKKDRHTKVN GRERRVLLPP LCAARIFQLT CELGYKTHGE  60
TIGWLLRQAE PSIISATGTG ISPSIVDLTS SSSSPSTSSS SLPILPLPSQ DNNNVVVGQH  120
ANSVHVSIDN EINSKETFLP LDFDVFSNFN VEFSAGEIEM LQSLMTRDAD WNGAFNFSKD  180
LTFLTICAQQ MRGDITQRMC TEAEILAYGQ SFAGGKSRSN FLKPNINCNL TSWVNGCEPG  240
WGCKANQKVD IDSTKKDIPV RSLDCLPCCE GFFCPRGLTC MIRSNQRILY ISSNVNVFGC  300
SNFIHLLRIF GLLLKLAHWG LIVLLDNSIR LVEYVNQSIC RYRYQLPPGK PNHTCGGADI  360
WADIASSSEA GLCFLLIIIY NCSDQVLATR ERRQASTRER AVQSVRETQA REKWKSAKDI  420
AKKHAVGLQS QLSRTFSRKT SKKPELKGFG SKHSDSAIPP AGKGKKKDKN NLSKILNDIE  480
QNPDNPEGFN VEIGDKNVKK QAPRGKQLHT QSQIFKYAYG QIEKEKALAE QNKNLTFSGV  540
ISMASDIEIR KRPTIEVAFK DLTLTLKGKN KHLLRCVTGK LYPGRVSAVM GPSGAGKTTF  600
LSALTGKATG CHTTGQVHVN GQESSIRSYK KIIGFVPQDD IVHGNLTVEE NLWFSARCRL  660
PADLPKEEKV LVVERVIESL GLQAIRDSLV GTVEKRGISG GQRKRVNVGL EMVMEPSLLI  720
LDEPTSGLDS SSSQLLLRAL RREALEGVNI CMVLHQPSYT LFKMFDDFIL LAKGGLTVYH  780
GPVNKVEEYF SSMGINVPDR VNPPDYFIDI LEGIVKLSPS LGVTYKQLPV RWMLHNGYPV  840
PMDMLQSVEG MSAPSGEGSS SGAATGGEEE APSFAGELWQ DVKCNVEMKK DILHINFLAS  900
HDLSNRIAAL RSFSLDKLHY WRESSSGMSS LAYFLSKDTV DHFSTVIKPL VYLSMFYFFN  960
NPRSSVIDNY FVLLCLVYCV TGIAYVLAIF LQPGPAQLWS ALLPVVLTLV ATYQNEDDSK  1020
YVKYLSDLCY TKWALEAFVI SNAKRPSYRD GNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5nj3_A	1e-53	571	813	70	309	ATP-binding cassette sub-family G member 2
5nj3_B	1e-53	571	813	70	309	ATP-binding cassette sub-family G member 2
5njg_A	1e-53	571	813	70	309	ATP-binding cassette sub-family G member 2
5njg_B	1e-53	571	813	70	309	ATP-binding cassette sub-family G member 2
6eti_A	1e-53	571	813	61	300	ATP-binding cassette sub-family G member 2
6eti_B	1e-53	571	813	61	300	ATP-binding cassette sub-family G member 2
6feq_A	1e-53	571	813	61	300	ATP-binding cassette sub-family G member 2
6feq_B	1e-53	571	813	61	300	ATP-binding cassette sub-family G member 2
6ffc_A	1e-53	571	813	70	309	ATP-binding cassette sub-family G member 2
6ffc_B	1e-53	571	813	70	309	ATP-binding cassette sub-family G member 2
6hij_A	1e-53	571	813	61	300	ATP-binding cassette sub-family G member 2
6hij_B	1e-53	571	813	61	300	ATP-binding cassette sub-family G member 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang10g03030.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017409438.1	0.0	PREDICTED: ABC transporter G family member 28-like isoform X1
Swissprot	Q9FF46	0.0	AB28G_ARATH; ABC transporter G family member 28
TrEMBL	A0A0L9TE16	0.0	A0A0L9TE16_PHAAN; Uncharacterized protein
STRING	XP_007132291.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF914	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	6e-24	TCP family protein

Publications ? help Back to Top
Sánchez-Fernández R,Davies TG,Coleman JO,Rea PA The Arabidopsis thaliana ABC protein superfamily, a complete inventory. J. Biol. Chem., 2001. 276(32): p. 30231-44 [PMID:11346655] Garcia O,Bouige P,Forestier C,Dassa E Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems. J. Mol. Biol., 2004. 343(1): p. 249-65 [PMID:15381434] Bock KW, et al. Integrating membrane transport with male gametophyte development and function through transcriptomics. Plant Physiol., 2006. 140(4): p. 1151-68 [PMID:16607029] Sugiyama A, et al. Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family. DNA Res., 2006. 13(5): p. 205-28 [PMID:17164256] Verrier PJ, et al. Plant ABC proteins--a unified nomenclature and updated inventory. Trends Plant Sci., 2008. 13(4): p. 151-9 [PMID:18299247]