PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g04540.1
Common NameLR48_Vigan01g016200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 474aa    MW: 53543.9 Da    PI: 4.4338
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g04540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS267.54.3e-821024622373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      +lLl+ Aeav++++  la+ ++++l++ +s ++    ++Rla++f+++L  + ++  +el      ++ + +++ +++  +++++e+sP++kf+
  Vang10g04540.1 102 ADLLLTGAEAVEAQNWDLASDIIEKLNNASSLEKgdGLLNRLAFFFAQGLYYKSTN-APELL----LQRGAVSTHRDAFCLFQILQELSPYVKFA 191
                     679**************************88765434689************9999.44443....33333334568999999************ PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taNqaIlea+eg e vHi+Dfdi++G+QWp+L+  La R++++ slR+ ++   ++  + + e+tg+rL++fA++++ pf f+ ++++r ed+
  Vang10g04540.1 192 HFTANQAILEATEGVENVHIVDFDIMEGIQWPPLMVDLAMRKNSTTSLRVSAITV-DQRGAASAEQTGRRLKEFAASINFPFTFDQMMMEREEDI 285
                     ******************************************************9.55689999**********************988887777 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl.eaklpres 279
                     e   +  + gE+++Vn+++  + ++++s sl +   ++L+ v +l P++vv+ve+e    + + s sF+e f+eal++ysa+ dsl ++  ++++
  Vang10g04540.1 286 E--GI--EVGETVIVNCMI-DQWMPNRSFSLVK---TFLDGVTKLWPRLVVLVEEElfnfSRLKSMSFVEFFCEALHHYSAVCDSLgSSVWGSHK 372
                     4..44..55**********.5678899999999...********************8775556999********************555556666 PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      + + +E+e+lg +i + v +   er+er+     W+e + +  GFk vp+s+ + +qak l++ ++  gy v+ e+g l l+Wk+rpL+++S W
  Vang10g04540.1 373 MASRLIEKEILGLRILDSVRQFPCERNERKV----WEEGFYSlKGFKCVPMSSCNISQAKFLVSLFG-GGYWVQFEKGRLALCWKSRPLTVASIW 462
                     9999*********************999988....***997758***********************.89************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.38475444IPR005202Transcription factor GRAS
PfamPF035141.5E-79102462IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MNQLHECCLE NAFPFQTEDI SSPNTIMDEM FGEESMEGLL LQHTNNQDFG FMNHNDPPEI  60
ELCDGFGSSP EENVHVSMEE EEEGDCYLKG IQAEVMEQTS LADLLLTGAE AVEAQNWDLA  120
SDIIEKLNNA SSLEKGDGLL NRLAFFFAQG LYYKSTNAPE LLLQRGAVST HRDAFCLFQI  180
LQELSPYVKF AHFTANQAIL EATEGVENVH IVDFDIMEGI QWPPLMVDLA MRKNSTTSLR  240
VSAITVDQRG AASAEQTGRR LKEFAASINF PFTFDQMMME REEDIEGIEV GETVIVNCMI  300
DQWMPNRSFS LVKTFLDGVT KLWPRLVVLV EEELFNFSRL KSMSFVEFFC EALHHYSAVC  360
DSLGSSVWGS HKMASRLIEK EILGLRILDS VRQFPCERNE RKVWEEGFYS LKGFKCVPMS  420
SCNISQAKFL VSLFGGGYWV QFEKGRLALC WKSRPLTVAS IWVPKGYSSQ KVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3810946527381Protein SCARECROW
5b3h_A1e-3810946526380Protein SCARECROW
5b3h_D1e-3810946526380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g04540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414142.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A0L9TJ140.0A0A0L9TJ14_PHAAN; Uncharacterized protein
STRINGXP_007159815.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-44GRAS family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]