PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g06180.1
Common NameLR48_Vigan11g020300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 311aa    MW: 34647.6 Da    PI: 5.1629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g06180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19101151256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     +++GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ +l+g+
  Vang10g06180.1 101 KFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAAIVYDNAAIQLRGA 151
                     89*******.**********84....34*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-29100157IPR001471AP2/ERF domain
PROSITE profilePS5103223.182101158IPR001471AP2/ERF domain
SMARTSM003802.1E-36101164IPR001471AP2/ERF domain
CDDcd000181.10E-30101157No hitNo description
SuperFamilySSF541716.21E-21101157IPR016177DNA-binding domain
PfamPF008472.5E-12101150IPR001471AP2/ERF domain
PRINTSPR003674.9E-10102113IPR001471AP2/ERF domain
PRINTSPR003674.9E-10124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MASSAIKQTQ HLNRTKLLVQ EHTLLKNHHH PKLVRIRVTD ADATDSSSDD EQPSVPSTRR  60
RVKSFVNEIT IHGARVKVVS RKRKVKSGGA PALRRRTGAR KFRGVRQRPW GKWAAEIRDP  120
SRRVRLWLGT YDTAEEAAIV YDNAAIQLRG ADALTNFITP PAEDRKTGYC SGEESPSEEL  180
RSPTSVLRCC WASEEAESVT ANDAVGPASE CEHSWFSEDS KLKDESVFGI PEDVVFGFES  240
TLDMFDECDN NVAESSGIFL GDDFDLSGCF VSEKENLDLG FGFGFTSWQR ECDNFQDIGD  300
LFVWDPLVAL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19100157462ATERF1
3gcc_A3e-19100157462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g06180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441893.10.0PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLA0A0L9VQ220.0A0A0L9VQ22_PHAAN; Uncharacterized protein
STRINGXP_007160137.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.26e-50cytokinin response factor 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]