PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g07110.3
Common NameLR48_Vigan11g010200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 384aa    MW: 41274.8 Da    PI: 8.645
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g07110.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.6e-4196172278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC++dls++++yhrrhkvCevhsk+++v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Vang10g07110.3  96 CLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 172
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-3390157IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.80493170IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-3894175IPR004333Transcription factor, SBP-box
PfamPF031103.2E-3096169IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDWNLKAASW DLSEVNQANL PNMETVEGSS RYGMFTSKGE FSVDLKLGQV GNSGTESVLT  60
KSKDAVGLSK ISSSSSSSGS SKRARALGNA TQTVSCLVDG CHSDLSNCRD YHRRHKVCEV  120
HSKTAQVTIG GQKQRFCQQC SRFHSLEEFD EGKRSCRKRL DGHNRRRRKP QPEPLTRSGS  180
FLSNYQGTQL LPFSSSHVYP STTVMNPTWG GIVASGDVRI HGHNQQGELF LGTSPTGYKE  240
GKQLAFLQGD HTLNNQSPHL AGASVGQAHM FLRTGPYSES SGLRCKMLCD SLTSSVHDSS  300
SRALSLLSSP QPHSPGNGLS QIVNPHSPLM QPLGLSLHDG NSLGPVDPVL GLNGSDHSSS  360
MYNIGSNGSQ GNEASPVFPF QWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28961691184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152169KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang10g07110.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017440759.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_017440760.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_017440761.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_017440762.10.0PREDICTED: squamosa promoter-binding-like protein 13A
SwissprotB9DI203e-75SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI113e-75SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLA0A0L9VPU00.0A0A0L9VPU0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QXP00.0A0A0S3QXP0_PHAAN; Uncharacterized protein
STRINGXP_007160020.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-73SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]