PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g02040.1
Common NameLR48_Vigan01g152300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 374aa    MW: 42558.8 Da    PI: 6.4281
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g02040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-193481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l d++ ++G gtW+t +++ g++R +k+c++rw +yl
   Vang11g02040.1 34 KGPWTPEEDEKLMDYISKHGRGTWRTLPKHAGLNRNGKSCRLRWENYL 81
                     79********************************************97 PP
2Myb_DNA-binding52.21.4e-1687130146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++  lG++ W++Ia  ++ gRt++++k++w++
   Vang11g02040.1  87 RGKLTEEEEQLIINLHSVLGNK-WSKIATSLP-GRTDNEIKNYWNT 130
                      7999******************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.8162981IPR017930Myb domain
SuperFamilySSF466895.62E-3131128IPR009057Homeodomain-like
SMARTSM007178.8E-153383IPR001005SANT/Myb domain
PfamPF002491.0E-163481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-243588IPR009057Homeodomain-like
CDDcd001672.85E-113681No hitNo description
PROSITE profilePS5129427.34382136IPR017930Myb domain
SMARTSM007175.1E-1586134IPR001005SANT/Myb domain
PfamPF002495.7E-1587130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2489136IPR009057Homeodomain-like
CDDcd001672.25E-1191132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
LYLLFASTFF VVEHLLCPCL MGRSPSSNES NVKKGPWTPE EDEKLMDYIS KHGRGTWRTL  60
PKHAGLNRNG KSCRLRWENY LRPDIKRGKL TEEEEQLIIN LHSVLGNKWS KIATSLPGRT  120
DNEIKNYWNT TIRKKLLHMG IDPETHRPRT DFDHLMNLSQ LLGMSNLGTS MSPWTNPTGL  180
QADVTQLAKL QVLQNMLQLM NNSSFISMTN PYLVDSQILN PPTFDTFLHG TNTLQVRDPM  240
FRGPEYPNPT ANNISDPFSQ TPSEYSQQNI FKSGIEKENE TNHQEVRSYT KNINTSQQNQ  300
AENLLPPLVA SCPRTTTFNK MESNYNEAQK STESPFSTTF EAWEKFLIED DEASGSYWKE  360
ILDLTSTSAS PVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32341367108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g02040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434219.10.0PREDICTED: transcription repressor MYB4-like
TrEMBLA0A0L9TNE70.0A0A0L9TNE7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R3A30.0A0A0S3R3A3_PHAAN; Uncharacterized protein
STRINGXP_007156413.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.15e-80myb domain protein 107
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]