PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g02060.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 253aa    MW: 28399.5 Da    PI: 8.7782
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g02060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-08327126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +kt+lC+ f++ GtC+y  +C+FaH+
  Vang11g02060.1  3 FKTKLCCKFRA-GTCPYITNCNFAHS 27
                    69*********.*************8 PP
2zf-CCCH18.82.8e-0684961426
                    --TTTTT-SS-SS CS
         zf-CCCH 14 tCkyGdrCkFaHg 26
                    +C++G++C+FaHg
  Vang11g02060.1 84 YCPFGNKCHFAHG 96
                    9***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.84229IPR000571Zinc finger, CCCH-type
SMARTSM003560.0035228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-14235IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5327IPR000571Zinc finger, CCCH-type
SMARTSM00356147797IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.8838498IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-58497IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MFFKTKLCCK FRAGTCPYIT NCNFAHSIEE LRRPPPNWQE IVAAHEEEKA VMAEPREEFQ  60
IPTVGSSTFA GDTMQRSYKG RHWYCPFGNK CHFAHGATAG VILAIFCSSM FACQKITLVH  120
REMHGSFYFY TMKGITNSTY SKRELLGFEV WKFGLLFFRK LHRYGGGLME GESRDGVSVV  180
GCDTNKGAAS KASADNVVAA VTPVAHSDVY HIGVPSQRPS IVIQRPGQRT HQKWKGPDKI  240
SRIYGDWIDD IE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g02060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-155AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203720.11e-109zinc finger CCCH domain-containing protein 56
SwissprotQ9LQM38e-60C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A151R8961e-107A0A151R896_CAJCA; Zinc finger CCCH domain-containing protein 56
STRINGGLYMA01G10610.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-62C3H family protein