PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g02060.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 191aa    MW: 21245.9 Da    PI: 7.1632
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g02060.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08327126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +kt+lC+ f++ GtC+y  +C+FaH+
  Vang11g02060.2  3 FKTKLCCKFRA-GTCPYITNCNFAHS 27
                    69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0035228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.55E-7233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-14235IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-6327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MFFKTKLCCK FRAGTCPYIT NCNFAHSIEE LRRPPPNWQE IVAAHEEEKA VMAEPREEFQ  60
IPTVGSSTFA GDTMQRYVFS SNKYRFSHSS YSDMVITELH RYGGGLMEGE SRDGVSVVGC  120
DTNKGAASKA SADNVVAAVT PVAHSDVYHI GVPSQRPSIV IQRPGQRTHQ KWKGPDKISR  180
IYGDWIDDIE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g02060.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412251.11e-61PREDICTED: zinc finger CCCH domain-containing protein 12
RefseqXP_017412252.11e-61PREDICTED: zinc finger CCCH domain-containing protein 12
TrEMBLA0A1R3JEQ51e-82A0A1R3JEQ5_9ROSI; Zinc finger, CCCH-type
STRINGGSMUA_Achr5P03440_0012e-66(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.11e-37C3H family protein