PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g02320.2
Common NameLR48_Vigan01g179700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family DBB
Protein Properties Length: 205aa    MW: 22653 Da    PI: 8.2183
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g02320.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.1e-071848434
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                    + C+ +e+  ++ fC  ++  lC+ C  + H
  Vang11g02320.2 18 TLCDACESAAAIVFCAADEAALCRACDKKVH 48
                    57*************************9998 PP
2zf-B_box31.24.4e-1067107238
        zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 
                     + ++C+ +e+ ++ ++Ce++++ lC +C +  H g    H+
  Vang11g02320.2  67 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtHE 107
                     5799**************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8261562IPR000315B-box-type zinc finger
SMARTSM003363.8E-91562IPR000315B-box-type zinc finger
PfamPF006431.2E-51856IPR000315B-box-type zinc finger
CDDcd000215.74E-61860No hitNo description
SuperFamilySSF578459.39E-663102No hitNo description
SMARTSM003361.2E-1166111IPR000315B-box-type zinc finger
PROSITE profilePS501199.52766111IPR000315B-box-type zinc finger
PfamPF006435.5E-867107IPR000315B-box-type zinc finger
CDDcd000213.96E-869108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MQNNTPSNSK PSTSIMRTLC DACESAAAIV FCAADEAALC RACDKKVHMC NKLASRHVRV  60
GLASPSDVPR CDICENAPAF FYCETDGSSL CLQCDMIVHV GGKRTHERYL LFRQRVEFPG  120
EKPGKSENPA SQPLDPSETK RGQNALPKIK MGEKQQNHRM PLILTQEPNA DEHAMMGTKM  180
IDLNMKPQRI HEPTSNNQVR MPGK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g02320.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-146AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435637.11e-152PREDICTED: B-box zinc finger protein 18-like isoform X1
SwissprotC0SVM53e-74BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0L9TP531e-151A0A0L9TP53_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R4301e-151A0A0S3R430_PHAAN; Uncharacterized protein
STRINGXP_007156118.11e-136(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-76DBB family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]