PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g02540.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SRS

Protein Properties

Length: 234aa MW: 26148.9 Da PI: 7.676

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g02540.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	202	1.8e-62	100	234	3	149
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 +g++sCqdCGnqakkdC h+RCRtCCksrg++C+thvkstWvpa+krrerqqqla ++++++ ++++ skr+r+ +++t+l+s+e Vang11g02540.1 100 EGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAVLQEQQQ--QQRDLSKRPRDP-------TACTRLPSSE-- 183 6889**************************************************976664..467778888875.......7788888774.. PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLyd 149 le ++P+ vss+a frcvrvs v+d+++ +aYqtav+igGh+fkGiLyd Vang11g02540.1 184 -GLEEGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHLFKGILYD 234 .679999******************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.6E-61	102	234	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.8E-27	104	146	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.7E-23	189	234	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MAGLFSLGGG RGSNNNQQDN TTNNEIPAAE TLFWYSKTDD VSSYRGFELW NQQQEQHVMP 60 PHARPLLQRD LYSSGVGPSR GVSDDHSSSR SAFVAMRAAE GGISCQDCGN QAKKDCPHMR 120 CRTCCKSRGY ECQTHVKSTW VPASKRRERQ QQLAVLQEQQ QQQRDLSKRP RDPTACTRLP 180 SSEGLEEGHF PSVVSSPAEF RCVRVSCVED ADDRYAYQTA VNIGGHLFKG ILYD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g02540.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017427562.1	1e-177	PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
Swissprot	Q9SD40	6e-69	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A0S3R4D9	1e-176	A0A0S3R4D9_PHAAN; Uncharacterized protein
STRING	XP_007156095.1	1e-158	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-56	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]