PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g02820.1
Common NameLR48_Vigan01g185100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 136aa    MW: 14112.8 Da    PI: 9.7108
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g02820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.6e-142775355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    y GVr+++ +g+Wv+eIr+p+    +   ++lg+f t+e+A  a++ a+++l+g
  Vang11g02820.1 27 YYGVRRRS-SGKWVSEIREPR----KpNMIWLGTFATPEMAVIAYDVAALALKG 75
                    67***888.8*********94....3679**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-272585IPR001471AP2/ERF domain
SMARTSM003802.9E-252689IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-192685IPR016177DNA-binding domain
PfamPF008471.2E-72675IPR001471AP2/ERF domain
PROSITE profilePS5103220.1122683IPR001471AP2/ERF domain
PRINTSPR003673.7E-102738IPR001471AP2/ERF domain
CDDcd000183.21E-252785No hitNo description
PRINTSPR003673.7E-106585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MRSINGTICV ASSTRASNSN GGRHRVYYGV RRRSSGKWVS EIREPRKPNM IWLGTFATPE  60
MAVIAYDVAA LALKGKDAEL NFPDSASSFP VPSSSAACDI QMVAASATAA VGAANDALSE  120
GSRGGNVSEM ANASR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-132183972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g02820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418132.13e-88PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR02e-36ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0L9TP152e-87A0A0L9TP15_PHAAN; Uncharacterized protein
STRINGGLYMA19G37670.13e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.16e-25ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]