PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g03190.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TALE

Protein Properties

Length: 596aa MW: 64536.6 Da PI: 6.926

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g03190.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	1.9e-09	375	412	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Vang11g03190.1 375 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 412 664559******************************88 PP
2	BELL	94.6	9.2e-31	246	306	12	72
BELL 12 LlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 Ll+ Vd+rY++y+eq+++v++sF++v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ Vang11g03190.1 246 LLEEFCSVDRRYSHYCEQMHMVVNSFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 306 5555557***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.8E-28	228	304	IPR006563	POX domain
Pfam	PF07526	7.2E-5	234	253	IPR006563	POX domain
Pfam	PF07526	8.8E-26	253	303	IPR006563	POX domain
PROSITE profile	PS50071	12.568	353	416	IPR001356	Homeobox domain
SMART	SM00389	2.0E-9	356	420	IPR001356	Homeobox domain
CDD	cd00086	2.03E-13	356	417	No hit	No description
SuperFamily	SSF46689	4.23E-17	357	423	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-28	359	422	IPR009057	Homeodomain-like
Pfam	PF05920	2.8E-18	373	412	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MGIATPSSSL PSIISHSKTY QQHHSNSMSQ DYHHQGIFSF PNGFQRSATT MSHQDPHQQQ 60 QHQQIRRDKV RVQGFEPQQT LVPIEEDEPG SLPWYGNRQG MLTGSPSPPP PPSSTLHMLL 120 PTFPPGSGGS FGQFTWLPDT AQDGGGPSTV VEGPGHGQGL SLSLSSSLEA AKAEELRMGD 180 SGFLYYNQAS GGPSSYKSAL GGHHHQALLG QTHQGHVGFA ASSSTSSLGV VNALRNSKYI 240 KAAQELLEEF CSVDRRYSHY CEQMHMVVNS FDMVMGFGAA VPYTALAQKA MSRHFRCLKD 300 AITAQLKHSC ELLGEKDGAG NSGLTKGETP RLKMLEQSLR QQRAFHQMGM MEQEAWRPQR 360 GLPERSVNIL RAWLFEHFLH PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMVED 420 MYQQELKEAE GAEEERERNQ SSSNNSGHQL AQTPTPSTTA STATAPPPPP TTSTATTPPT 480 AKRSDTESDP SLAPINNNRP QGAFSETQPN SSTTATASEV APPSELPRSM GADDSCRHGS 540 LVAAEFGTGP GASDIGSTLI RFGTTAGDVS LTLGLRHSGN MPEKTPFSVR DFGGI*

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MGIATPSSSL PSIISHSKTY QQHHSNSMSQ DYHHQGIFSF PNGFQRSATT MSHQDPHQQQ  60
QHQQIRRDKV RVQGFEPQQT LVPIEEDEPG SLPWYGNRQG MLTGSPSPPP PPSSTLHMLL  120
PTFPPGSGGS FGQFTWLPDT AQDGGGPSTV VEGPGHGQGL SLSLSSSLEA AKAEELRMGD  180
SGFLYYNQAS GGPSSYKSAL GGHHHQALLG QTHQGHVGFA ASSSTSSLGV VNALRNSKYI  240
KAAQELLEEF CSVDRRYSHY CEQMHMVVNS FDMVMGFGAA VPYTALAQKA MSRHFRCLKD  300
AITAQLKHSC ELLGEKDGAG NSGLTKGETP RLKMLEQSLR QQRAFHQMGM MEQEAWRPQR  360
GLPERSVNIL RAWLFEHFLH PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMVED  420
MYQQELKEAE GAEEERERNQ SSSNNSGHQL AQTPTPSTTA STATAPPPPP TTSTATTPPT  480
AKRSDTESDP SLAPINNNRP QGAFSETQPN SSTTATASEV APPSELPRSM GADDSCRHGS  540
LVAAEFGTGP GASDIGSTLI RFGTTAGDVS LTLGLRHSGN MPEKTPFSVR DFGGI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-16	362	419	1	58	Homeobox protein Meis1
4xrs_B	2e-16	362	419	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g03190.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007156003.1	0.0	hypothetical protein PHAVU_003G250500g
Refseq	XP_007156004.1	0.0	hypothetical protein PHAVU_003G250500g
Swissprot	Q9SW80	1e-122	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A4D6L0K4	0.0	A0A4D6L0K4_VIGUN; Notch
STRING	XP_007156003.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-111	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]