PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g03860.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 214aa    MW: 23139.1 Da    PI: 10.3751
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g03860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.6e-1791141256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr++  +g+W+AeIrdp     +  +r++lg+f+ta+ A +a+++a+++++g+
  Vang11g03860.1  91 RYRGVRQRL-WGKWAAEIRDP-----HkaARVWLGTFDTAKAATRAYDEAALRFRGN 141
                     7*****999.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.9E-1291140IPR001471AP2/ERF domain
PROSITE profilePS5103223.94791148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-3191149IPR001471AP2/ERF domain
SMARTSM003804.1E-3391154IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-2191150IPR016177DNA-binding domain
PRINTSPR003675.3E-1392103IPR001471AP2/ERF domain
CDDcd000184.72E-24100150No hitNo description
PRINTSPR003675.3E-13130150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MRCRVVYAEM MVANLLELGS LGQNQLGSSS PFGCKGYCSS VPTHWCHSLL GSGSVGQKRA  60
REDDSAAAVS GGEGGSSRSA SQEESGERRR RYRGVRQRLW GKWAAEIRDP HKAARVWLGT  120
FDTAKAATRA YDEAALRFRG NRAKLNFPEN INAVRPLHLP DFSATSLSGS GDVPAVTGYS  180
PMVMQGTPLQ RLLGLFSAST EHRGVPWTRS LVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2190153468ATERF1
3gcc_A2e-2190153468ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g03860.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512914.15e-65ethylene-responsive transcription factor ABR1 isoform X1
RefseqXP_022641246.11e-65ethylene-responsive transcription factor ERF110 isoform X2
RefseqXP_022641247.11e-65ethylene-responsive transcription factor ERF110 isoform X2
RefseqXP_022641248.11e-65ethylene-responsive transcription factor ERF110 isoform X2
RefseqXP_022641249.11e-65ethylene-responsive transcription factor ERF110 isoform X2
TrEMBLA0A1S3V4451e-63A0A1S3V445_VIGRR; ethylene-responsive transcription factor ABR1 isoform X1
TrEMBLA0A3Q0FBS83e-64A0A3Q0FBS8_VIGRR; ethylene-responsive transcription factor ERF110 isoform X2
STRINGXP_007143561.11e-46(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-29ERF family protein