PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g04110.1

Common Name

LR48_Vigan01g191100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 318aa MW: 34065.4 Da PI: 10.0862

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g04110.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8.4e-31	246	303	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeH h+ Vang11g04110.1 246 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGEHSHT 303 99**********************988**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	4.3E-16	196	242	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.3E-32	233	303	IPR003657	WRKY domain
PROSITE profile	PS50811	30.285	239	305	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-26	241	304	IPR003657	WRKY domain
SMART	SM00774	3.4E-37	244	304	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	246	302	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MAVELMTGYR TTTFTTKAEE NAVQEAASGL ESVEKLIRIL SQTPQQYNSS NQIAIDCKAV 60 ADLXVSKFKN VISLLGPGPT PTPAPTGHAR FRRAPLPPPP SPPSTQPSQP PVFHATPLHQ 120 IPKTDGTLND SSSKTIYFSY PSPATSFISS LTADAHTKQP SSSSPPPPAP GSFHITTLSH 180 VSSAGKPPLS SSSSFKRKCS SENLPSGKCG SSSSRCHCSK KSRKMRLKKV VRVPAISLKM 240 ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERALDDPA MLVVTYEGEH 300 SHTLSAADAT NLILESS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-21	232	304	2	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g04110.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017436975.1	0.0	PREDICTED: probable WRKY transcription factor 15
Swissprot	Q9SV15	3e-81	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A0L9TP72	0.0	A0A0L9TP72_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R4R5	0.0	A0A0S3R4R5_PHAAN; Uncharacterized protein
STRING	XP_007155894.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2177	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	4e-57	WRKY DNA-binding protein 15

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]