PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g04530.1
Common NameLR48_Vigan01g195800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 454aa    MW: 50709.8 Da    PI: 5.7164
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g04530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.91.3e-91324502373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl..fsevsPi 90 
                     ++lLl+cA+a++++d +laq++L+ l+++aspdgd++qRla+ f++AL ar a+  ++++k l + +++ ++     ++++++ +l  f++++P+
  Vang11g04530.1  32 EQLLLHCANAIQTNDVTLAQQILWVLNNIASPDGDSNQRLASSFLRALTARAAQ--TGTCKMLVAVADHARTnlsiDTHKFSVIELanFVDLTPW 124
                     79***************************************************9..77777774444443333544344444444489******* PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl 181
                     ++f++ +aN aIlea+eg + +Hi+D+++++++Q p+L++a+asR e pp +++T+ ++   +       ++ e+g +L +fA++ +v +ef+v+
  Vang11g04530.1 125 HRFGFTAANAAILEATEGFSVIHIVDLSLTHCMQIPTLIDAIASRHEVPPLIKLTVPDATFRDippmLDLSYDELGAKLVNFARSRNVVMEFRVV 219
                     *******************************************************999966668877788999*********************8 PP

            GRAS 182 ...vakrledleleeLrvkp...........gEalaVnlvlqlhrll............................desvsleserdevLklvksl 234
                        + + ++dl +e+Lrv++            Eal++n++++lh+++                             + +s++s r+ +Lk +++l
  Vang11g04530.1 220 sstYQDGFADL-IEQLRVQQqhfvyaveprpCEALVINCHMMLHYIPdetlhampetdltsllydsssaagsssaISVTSTSSLRSLFLKSLRGL 313
                     76544566666.88888887788888888889****************************************99633344444788********* PP

            GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                      P+vv++v+++ad++s++++ r+  a++y +  +d++++ lpr s++r+++E+  + ++i+nv+a+eg +r+er e +++W++r+++a F+ v++
  Vang11g04530.1 314 DPTVVILVDEDADLTSNNLVCRLRCAFNYLWIPYDTVDTFLPRGSKQRQWYEAD-ICWKIENVIAQEGVQRVERVEPKNRWEQRMKNANFQGVAF 407
                     ******************************************************.**************************************** PP

            GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     se+ + ++k +l +++  g+ ++ e++ +vl+Wk++++v++SaW
  Vang11g04530.1 408 SEDSVGEVKGMLDEHA-AGWGLKREDEHIVLTWKGHNVVFASAW 450
                     ****************.999************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.3125432IPR005202Transcription factor GRAS
PfamPF035144.3E-8932450IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MNKNQIPRTR PWPAGFPTSK ALTNFADANC MEQLLLHCAN AIQTNDVTLA QQILWVLNNI  60
ASPDGDSNQR LASSFLRALT ARAAQTGTCK MLVAVADHAR TNLSIDTHKF SVIELANFVD  120
LTPWHRFGFT AANAAILEAT EGFSVIHIVD LSLTHCMQIP TLIDAIASRH EVPPLIKLTV  180
PDATFRDIPP MLDLSYDELG AKLVNFARSR NVVMEFRVVS STYQDGFADL IEQLRVQQQH  240
FVYAVEPRPC EALVINCHMM LHYIPDETLH AMPETDLTSL LYDSSSAAGS SSAISVTSTS  300
SLRSLFLKSL RGLDPTVVIL VDEDADLTSN NLVCRLRCAF NYLWIPYDTV DTFLPRGSKQ  360
RQWYEADICW KIENVIAQEG VQRVERVEPK NRWEQRMKNA NFQGVAFSED SVGEVKGMLD  420
EHAAGWGLKR EDEHIVLTWK GHNVVFASAW LPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-491345366475Protein SHORT-ROOT
5b3h_B5e-501345312421Protein SHORT-ROOT
5b3h_E5e-501345312421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g04530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428317.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-175SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A0L9TPK70.0A0A0L9TPK7_PHAAN; Uncharacterized protein
STRINGXP_007155843.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77023347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-170GRAS family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]