PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g04540.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 246aa MW: 26977.9 Da PI: 8.91

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g04540.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.1	8.8e-31	17	118	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++Cvl+p++ ++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ Vang11g04540.1 17 SCNGCRVLRKGCSESCVLRPCLqwietSEAQGHATVFVAKFFGRADLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQA 111 6*******************9998777889************************************************************* PP DUF260 91 kaelall 97 ++e++l+ Vang11g04540.1 112 AVETVLR 118 *998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.901	16	122	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-26	17	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MRGNTEPRTP KTKIGMSCNG CRVLRKGCSE SCVLRPCLQW IETSEAQGHA TVFVAKFFGR 60 ADLMSFISNV PENQRPALFQ SLLFEACGRT VNPVNGAVGL LWTGNWHVCQ AAVETVLRGG 120 TLRPMPELMG LASPAADETS EVACSDIWRI RDPNPTCGFT NTRSHTRVSS ASKRKRLEEP 180 AKLQAAPNLD LRLTPIFLQK KVENRRPVSP SMTSEESGTT TACLESKFGD QWGHSGDRKV 240 LNLFI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g04540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017421901.1	1e-170	PREDICTED: LOB domain-containing protein 37
Swissprot	Q9SN23	2e-85	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A0L9TQG1	1e-169	A0A0L9TQG1_PHAAN; Uncharacterized protein
STRING	XP_007155842.1	1e-162	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	8e-88	LOB domain-containing protein 38