PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g05190.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LSD
Protein Properties Length: 126aa    MW: 13302.5 Da    PI: 7.7601
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g05190.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.56e-152852125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL+YP GA+sV+Ca+C++V
  Vang11g05190.3 28 CSGCRNLLMYPVGATSVCCAVCNAV 52
                    ************************9 PP
2zf-LSD142.21.3e-1396120125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+Ca+C++V
  Vang11g05190.3  96 CGNCRMLLMYQYGARSVKCAVCNFV 120
                     ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.7E-142555IPR005735Zinc finger, LSD1-type
PfamPF069439.8E-122852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.1E-1293123IPR005735Zinc finger, LSD1-type
PfamPF069438.1E-1396120IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MPVPLAPYPA PPAPYTPPAN GAQSQLVCSG CRNLLMYPVG ATSVCCAVCN AVTAVPPPEF  60
RTCLSCELNH CGLSLYFEGK HQVCIESANQ VAHVNCGNCR MLLMYQYGAR SVKCAVCNFV  120
TSVGAS
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g05190.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-110AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593714.14e-55protein LOL1
RefseqXP_021593716.14e-55protein LOL1
RefseqXP_021593717.14e-55protein LOL1
RefseqXP_021593718.14e-55protein LOL1
SwissprotQ93ZB15e-44LOL1_ARATH; Protein LOL1
TrEMBLA0A2C9UHS89e-54A0A2C9UHS8_MANES; Uncharacterized protein
STRINGcassava4.1_018557m1e-54(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-29lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]