PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g05880.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 203aa MW: 22701.9 Da PI: 9.2529

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g05880.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.7	5.8e-18	130	172	2	47
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAaka++ Vang11g05880.1 130 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYD 172 8******.******96655..****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.5E-24	129	174	IPR001471	AP2/ERF domain
CDD	cd00018	2.99E-23	129	173	No hit	No description
PROSITE profile	PS51032	18.637	130	172	IPR001471	AP2/ERF domain
Pfam	PF00847	5.3E-12	130	173	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-21	130	188	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.77E-16	130	175	IPR016177	DNA-binding domain
PRINTS	PR00367	9.8E-11	131	142	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.8E-11	154	170	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MANAAEVSAL NRIKLHLLGE LSPLATPQNN QTNQSPSQSS SSDSCLSFDH CFTELLDPEI 60 QLPLFEFHSK PQIIDLDTPK PLTSLHKKPQ LNRKPSLQIS LPKQTEWIQF GKQDPNPAVL 120 LPENQPEKKH YRGVRQRPWG KFAAEIRDPN KRGSRVWLGT FDTAIEAAKA YDRDFQRSAV 180 VAVISSSGFW IFTTNGCVKL VI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-22	129	173	1	45	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g05880.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017422112.1	1e-125	PREDICTED: ethylene-responsive transcription factor 5
Swissprot	O80341	2e-43	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A0L9TQV8	1e-123	A0A0L9TQV8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R5G2	1e-123	A0A0S3R5G2_PHAAN; Uncharacterized protein
STRING	GLYMA05G05130.1	2e-84	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1085	34	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	2e-44	ethylene responsive element binding factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]