PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g06150.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 655aa    MW: 72064.6 Da    PI: 9.268
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g06150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00086552574123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C+ Cgk F+++  L +H   +
  Vang11g06150.1 552 YLCHTCGKAFRSSRALGSHRIIC 574
                     66*****************9774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.073386403IPR007087Zinc finger, C2H2
PfamPF139120.0093552571IPR007087Zinc finger, C2H2
SMARTSM0035569552572IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.44E-7552615No hitNo description
PROSITE profilePS501579.162552579IPR007087Zinc finger, C2H2
PfamPF139121.1E-11592616IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598593615IPR007087Zinc finger, C2H2
SMARTSM003550.2593615IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280595615IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MVNGGLVEDV AVIGVLIGVQ FVYAGNALLL SYLMSLGLES LTIVTFTSFA TFLILLPFAF  60
YYERCRWPTK VGFKLFTQLF LLALGGVGIL VCRVTMFQSL FLKGINLTSP AMGTAMPNLA  120
PGRLEKVKLS CTYSRVKIVG TLLCVLGALT LSIMQSISAP PKSNKVGTIQ SPSPPTHVTF  180
DRHKLIGCLY LLVAILILSS NIVLQAFTLG DFPAPMSLCS ITCFFGTFMT VAVQLIEDHE  240
FKTGWPIVSV GDMIAYSLLK RGPVLVSMFS PIGTVCSVIF SVVTLGHTTN IGSTVLQLSR  300
YVPDVHWALL CALGQRERRM QLKQLDVAAQ DLVMPFWDHH CIAVYIGWLQ FQQTRGTKGK  360
ETSSVVGHSI TLTHVSHVWS IPVAPKSFTN GRALGGHMKA HLASFPLPPK PQTLTHSSFT  420
YSSSSDSQQE HLKEQDSLSY ALRENPKKTF RVTDPEDRES ETESKNPTRQ RSKRNRKSTM  480
LKLSFVVSTP LVTEPEPVSS VSDTSPEEDV AMSLMMLSRD TWNVVTNAGP PQRSKRRCTG  540
SETKLKKLRG KYLCHTCGKA FRSSRALGSH RIICCRQEES QNQNNDNNSI KVFECPFCYK  600
VFGSGQALGG HKRSHLIPSS SSTVNDSLKF KQTFIDLNMP AQPEEDDLSV VSDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1468473RQRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g06150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-36C2H2-like zinc finger protein