PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g08210.1

Common Name

LR48_Vigan01g235800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 295aa MW: 32193.2 Da PI: 8.3123

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g08210.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	2e-39	17	77	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGg++rknkk+s Vang11g08210.1 17 QEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGSCRKNKKVS 77 6899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	15	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-33	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.789	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MLPCSRPMTE RRLRPSQEQA LKCPRCESTH TKFCYYNNYS LSQPRYFCKT CRRYWTKGGT 60 LRNIPVGGSC RKNKKVSTKK HNDHQPAINQ NQTQPAGPSY IHNHKDLQHS FLDVQFSHLN 120 NILGTNAGVL GNPNFMDSKY SMGILENPGH IDFMESGLDG MNMIRGSTRS LDVLENSDMS 180 VGGGGVGLGD MSGYNGLPLN YQGLSSAAFG SMSLDGGISN VGSYIMDSCQ RLMLPYDGGH 240 NILNGSVDVK PNPKLLSLEW QDQACSEAEK VSLGYLNGSG SWSGYGSSTT NPLV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g08210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017427676.1	0.0	PREDICTED: dof zinc finger protein DOF5.6
TrEMBL	A0A0L9TQU3	0.0	A0A0L9TQU3_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R600	0.0	A0A0S3R600_PHAAN; Uncharacterized protein
STRING	XP_007155431.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5092	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	1e-46	Dof family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]