PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g08730.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 230aa    MW: 25383.9 Da    PI: 4.2324
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g08730.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB55.81.1e-17841681187
           NF-YB  11 anvsrimkkvlPanakiskdaketvqec........vsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                     a +++i+k++lP + ++++da++++ ec        ++efi +++se+++ c+re+++ti+++ +l al  lGf +y+e++ +  
  Vang11g08730.2  84 ATMTKIIKEMLPPDVRVARDAQDLLIECcvdvnqfvIVEFINLISSESNEVCNREEKRTIAPEHVLKALQVLGFGEYIEEVYAAY 168
                     7899********************999944444444479****************************************986543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.68E-2783214IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.6E-3084212IPR009072Histone-fold
PfamPF008084.2E-1484152IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVNAFGAVWV ALIGCERELV LLSCETVIIN SYISLSHVLA LAPSLPSATT NFNRAFWDSS  60
PLSIIGNFSF SFSISDLISD FLAATMTKII KEMLPPDVRV ARDAQDLLIE CCVDVNQFVI  120
VEFINLISSE SNEVCNREEK RTIAPEHVLK ALQVLGFGEY IEEVYAAYEQ HKMETMQDSL  180
KGGKWSNGAE MTEEEALAEQ QRMFAEARAR MNGGGITSKQ PDTDQSLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B7e-298420819133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g08730.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-125AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022639374.13e-97protein Dr1 homolog isoform X1
RefseqXP_022639376.13e-97protein Dr1 homolog isoform X1
SwissprotP495928e-77NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A3Q0F9S98e-96A0A3Q0F9S9_VIGRR; protein Dr1 homolog isoform X1
STRINGXP_007155169.12e-94(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.26e-78nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]