PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g08900.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 274aa    MW: 30440.7 Da    PI: 7.4693
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g08900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-081663447
                     S-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                     W  eE++ + +a++++  +     +W++Ia+ ++  ++ +++k ++q +
   Vang11g08900.1 16 WNYEEEKAFENAIAMHWIEeasneQWEKIASAVP-SKSMEEVKQHYQVL 63
                     999**************99***************.************86 PP
2Myb_DNA-binding39.11.7e-12143187347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
   Vang11g08900.1 143 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 187
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.2861168IPR017884SANT domain
SMARTSM007171.0E-41266IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-41463IPR009057Homeodomain-like
PfamPF002496.4E-61663IPR001005SANT/Myb domain
SuperFamilySSF466892.51E-91670IPR009057Homeodomain-like
CDDcd001671.16E-61664No hitNo description
PROSITE profilePS5129416.873136192IPR017930Myb domain
SuperFamilySSF466896.24E-17138193IPR009057Homeodomain-like
SMARTSM007172.3E-10140190IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.6E-17140190IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.5E-11141186IPR009057Homeodomain-like
PfamPF002496.4E-11143187IPR001005SANT/Myb domain
CDDcd001672.83E-9143188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
LQIQQRATMS SSGSLWNYEE EKAFENAIAM HWIEEASNEQ WEKIASAVPS KSMEEVKQHY  60
QVLVEDVSAI EAGHIPFPNY TSEETTSSNK DFHGSSKATS SDKRSNCNYS TGFSGLGHDS  120
TTHSTGKGAL SRSSEQERRK GIPWTEEEHR LFLLGLDKFG KGDWRSISRN FVISRTPTQV  180
ASHAQKYFIR LNSMNRDRRR SSIHDITSVN NGDVASNQAP ITGQHSSTVS SSTMGVGQSL  240
KHRVQGHIAP GLGILYLSIE LVDLATVPVR WWM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-17782275RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g08900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967720.0BT096772.1 Soybean clone JCVI-FLGm-21M9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421544.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN68e-80SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0L9TRD01e-180A0A0L9TRD0_PHAAN; Uncharacterized protein
STRINGXP_007155139.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.13e-69MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]