PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g11480.1

Common Name

LR48_Vigan01g283500

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Nin-like

Protein Properties

Length: 288aa MW: 33888.3 Da PI: 4.6356

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g11480.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.4	4.5e-26	138	187	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++s +++s+yF++pi++AA+e++v+lT+LK++CR++GI+RWPhRk+ sl Vang11g11480.1 138 RKLSRKTISEYFYMPITQAAREMNVGLTLLKKRCRELGIRRWPHRKLMSL 187 68999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.746	122	207	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-20	140	187	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MIMDSHPLMS WSSYYQIEEN PLPFTCQFSY SENSEVYPPP LQDLPIQEYH HDAVPLTEYY 60 PSDPLYETLA IEPTPTLRAD CDFYDISKGL PVWNEVNAVF DSEVDFLFRK KEESLKEMVD 120 DRKVNEGREE ITNPRNSRKL SRKTISEYFY MPITQAAREM NVGLTLLKKR CRELGIRRWP 180 HRKLMSLQTL INNVQELLKE EGPESEEKLR FAIETLENEK KLLEEMPDIE LEDNTKRLRQ 240 ACFKANYKKR KLGQREPECS SWSGAMSEYN NESEEELDMK YLLSQLA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g11480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017419709.1	0.0	PREDICTED: protein RKD1-like
TrEMBL	A0A0L9TSY2	0.0	A0A0L9TSY2_PHAAN; Uncharacterized protein
STRING	XP_007155308.1	1e-159	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-42	RWP-RK domain-containing protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]