PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g11550.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 499aa    MW: 56002.6 Da    PI: 6.4691
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g11550.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.4e-102381248
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     lv +++++G+g+W++++   g+ R+ k+c++rw +yl
   Vang11g11550.1  2 LVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 38
                     899********************************97 PP
2Myb_DNA-binding49.69.2e-164489148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T+ E+++++++ ++lG++ W++Ia++++  Rt++++k++w++++
   Vang11g11550.1 44 RGNFTEHEEKIIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHM 89
                     89********************.*********.************986 PP
3Myb_DNA-binding39.71.1e-12273316548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      T eEd  lv +++++G+g+W++++   g+ R+ k+c++rw +yl
   Vang11g11550.1 273 TSEEDIMLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 316
                      89****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.6140IPR001005SANT/Myb domain
CDDcd001672.06E-5138No hitNo description
SuperFamilySSF466891.43E-22185IPR009057Homeodomain-like
PROSITE profilePS5129412.116138IPR017930Myb domain
PfamPF002492.5E-8238IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-16245IPR009057Homeodomain-like
PROSITE profilePS5129423.7783993IPR017930Myb domain
SMARTSM007178.0E-164391IPR001005SANT/Myb domain
PfamPF002495.5E-144488IPR001005SANT/Myb domain
CDDcd001674.46E-114689No hitNo description
Gene3DG3DSA:1.10.10.602.6E-244693IPR009057Homeodomain-like
SMARTSM007176.2E-6268318IPR001005SANT/Myb domain
PROSITE profilePS5129414.657273320IPR017930Myb domain
PfamPF002494.1E-11273316IPR001005SANT/Myb domain
CDDcd001672.94E-8273316No hitNo description
Gene3DG3DSA:1.10.10.604.8E-16273319IPR009057Homeodomain-like
SuperFamilySSF466896.07E-19273345IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-7320345IPR009057Homeodomain-like
SMARTSM007174.1321419IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MLVSYIQEHG PGNWRSVPTN TGLMRCSKSC RLRWTNYLRP GIKRGNFTEH EEKIIIHLQA  60
LLGNRWAAIA SYLPERTDND IKNYWNTHMK KKMKPSDQNE EQEGHSSSSX SHPKGQWERR  120
LQTDIQTAKQ ALCDALSLHT TPATHAVPET KPSSTSHQPY SHASSSYASS YENISRLMEN  180
WMKTPNSLGD YSFNNMVNIN TPRSSSSEGA HSTTNTTCAQ DHVFDLFNFN SSTNYGSASQ  240
TQVPLTMIEN WLFEDGAFQS HEDLMSMSLE ESTSEEDIML VSYIQEHGPG NWRSVPTNTG  300
LMRCSKSCRL RWTNYLRPGI KRGNFTEHEE KIIIHLQALL GNRYSSSTIP SSLCDALSLH  360
TTPATHAVPE TKPSSTSHQP YSHASSSYAS SYENISRLME NWMKTPNSLG DYSFNNMVNI  420
NTPRSSSSEG AHSTTNTTCA QDHVFDLFNF NSSTNYGSAS QTQVPLTMIE NWLFEDGAFQ  480
SHEDLMSMSL EESTSGLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-2029315105C-Myb DNA-Binding Domain
1msf_C4e-2029315105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g11550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434077.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-86MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0L9TRW40.0A0A0L9TRW4_PHAAN; Uncharacterized protein
STRINGXP_007155313.11e-161(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.18e-75myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]