PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g11630.5

Common Name

LR48_Vigan01g282500

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 376aa MW: 39998.1 Da PI: 9.1108

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g11630.5	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.3	4.7e-41	51	223	2	131
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + Vang11g11630.5 51 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssy 145 789******************************************************************99987777777777555556666667 PP TCP 89 ....................................kaaksaakskksqksaasalnlakesr.akarararertrekmr 131 ++ ++++ + k++++++ l+l++ s ++ r+r t+++ + Vang11g11630.5 146 fnpnfslqqrrtlfpgialssdtnptntstllnfqsNNLNTSMLQAKPEAPST--LDLSDTSAeESTLGRKRRPTEQDLS 223 77777788888888888888888777777777764333333333333333333..6666644424444444445554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.9E-42	55	221	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.923	57	111	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008283	Biological Process	cell proliferation
GO:0009735	Biological Process	response to cytokinin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0010029	Biological Process	regulation of seed germination
GO:0010229	Biological Process	inflorescence development
GO:0031347	Biological Process	regulation of defense response
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
LEKKEDQEAA SCSTSSPYPS LAISAEPTTS NSTRSNQLAA ASDPPNRQKP PPKRTSTKDR 60 HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN 120 FTSLNISLRS SGSSMSVPSQ LRSSYFNPNF SLQQRRTLFP GIALSSDTNP TNTSTLLNFQ 180 SNNLNTSMLQ AKPEAPSTLD LSDTSAEEST LGRKRRPTEQ DLSSSSQHQM GSYLLQSSAG 240 TIPASHAANI WMVANSNTNQ VMSGDPIWTF PPVNNSALYR GTMSSGLHFM NFPTPMALLP 300 SQQLGSSGIG AVGGSSNNNS NNNGNNNMNE GHLSMLAGLS PYRPVIGVSE SQASGSQSHR 360 GGAADDRHDT TSHHS*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

LEKKEDQEAA SCSTSSPYPS LAISAEPTTS NSTRSNQLAA ASDPPNRQKP PPKRTSTKDR  60
HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN  120
FTSLNISLRS SGSSMSVPSQ LRSSYFNPNF SLQQRRTLFP GIALSSDTNP TNTSTLLNFQ  180
SNNLNTSMLQ AKPEAPSTLD LSDTSAEEST LGRKRRPTEQ DLSSSSQHQM GSYLLQSSAG  240
TIPASHAANI WMVANSNTNQ VMSGDPIWTF PPVNNSALYR GTMSSGLHFM NFPTPMALLP  300
SQQLGSSGIG AVGGSSNNNS NNNGNNNMNE GHLSMLAGLS PYRPVIGVSE SQASGSQSHR  360
GGAADDRHDT TSHHS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269\|PubMed:17953649, ECO:0000269\|PubMed:21668538, ECO:0000269\|PubMed:22155632, ECO:0000269\|PubMed:22267487, ECO:0000269\|PubMed:24689742, ECO:0000269\|PubMed:25655823, ECO:0000269\|PubMed:25757472, ECO:0000269\|PubMed:28132837}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00396	DAP	Transfer from AT3G47620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g11630.5

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269\|PubMed:17953649}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017412389.1	0.0	PREDICTED: transcription factor TCP14
Swissprot	Q93Z00	3e-64	TCP14_ARATH; Transcription factor TCP14
TrEMBL	A0A0L9TSX0	0.0	A0A0L9TSX0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R7V1	0.0	A0A0S3R7V1_PHAAN; Uncharacterized protein
STRING	XP_007155318.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	3e-59	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Steiner E, et al. The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin. Plant Physiol., 2016. 171(2): p. 1485-94 [PMID:27208284] Yang L, et al. Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence. Cell Host Microbe, 2017. 21(2): p. 156-168 [PMID:28132837] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]