PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g12510.1

Common Name

LR48_Vigan01g237400

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 188aa MW: 21430.9 Da PI: 9.3303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g12510.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.5e-09	17	67	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIksLq 55 + +Er+RR +++ ++L +++P+++ k+++ ls + L +A YIk+L+ Vang11g12510.1 17 KTIERNRRIHMKALCFKLVSIIPSQYlKPTKDMLSQQDQLDLAATYIKHLR 67 689*******************662555555**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.299	11	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.26E-4	11	71	No hit	No description
SuperFamily	SSF47459	1.44E-9	15	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-9	15	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	17	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MKNTNTTVTA SSKLDRKTIE RNRRIHMKAL CFKLVSIIPS QYLKPTKDML SQQDQLDLAA 60 TYIKHLRERI EKLKGEKEQA MKMMRTTQTN NGIFNIDADQ LPLLEIKELG SGIEVMLISG 120 VNKNFMLYEV ISVLEEEGVE VVTANFSTVD NKIFYTVHAQ VKISRVGVEP TRVYQKLQEL 180 IAPLESW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g12510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017434702.1	1e-137	PREDICTED: uncharacterized protein LOC108341536
TrEMBL	A0A0L9TQF4	1e-135	A0A0L9TQF4_PHAAN; Uncharacterized protein
STRING	XP_007155415.1	1e-111	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6849	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	5e-27	bHLH family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]