PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g12580.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 115aa    MW: 12947.3 Da    PI: 4.6099
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g12580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.5e-091038129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +g W +eEd  l ++vk++G+g W++I++
   Vang11g12580.1 10 KGFWNAEEDSVLTNYVKKHGTGKWNRIPK 38
                     688************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-10439IPR009057Homeodomain-like
PROSITE profilePS500906.911569IPR017877Myb-like domain
SuperFamilySSF466896.21E-8639IPR009057Homeodomain-like
PfamPF002491.1E-51138IPR001005SANT/Myb domain
CDDcd001671.77E-51339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MEAYENESKK GFWNAEEDSV LTNYVKKHGT GKWNRIPKVT AEGDCNSASS MERSGEGEKL  60
VHECWSDDLM ELGNMHEGIM RDDFGCSFSF PNSVFDLCTS PYCTQSFHHS FFAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g12580.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-123AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419051.11e-51PREDICTED: transcription factor WER-like
TrEMBLA0A0L9TQV02e-50A0A0L9TQV0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R6G42e-50A0A0S3R6G4_PHAAN; Uncharacterized protein
STRINGXP_007155422.15e-29(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.11e-10myb domain protein 66