PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g13300.1

Common Name

LR48_Vigan728s004600

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 238aa MW: 26811.3 Da PI: 6.9171

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g13300.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.3e-05	203	225	8	30
HHHHHHHHHHHHHHHHHCTSCCC CS HLH 8 rErrRRdriNsafeeLrellPka 30 ErrRR+ ++ +fe Lr +lP+ Vang11g13300.1 203 SERRRREILKVSFEALRAILPPE 225 6********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MAVFMGCKEG EIELGFSNIP QDDIETALKN LFPEDFYMRF QSIDQNPYSS SSSSFIISST 60 NTFNQSINVP GTSHSNFPDV LGVASTQPIS HQPLSQVIPF PSHLPTPEGE HQEMVRALIR 120 VLSSTSQQQL SHQVLPHNSV KHPGAADVVR YIPDMTNPNI EPHTDFNFRR QNLKNTSLVR 180 ERNSTVQATD HISTLQHHFR MISERRRREI LKVSFEALRA ILPPETKVCY NLAMPSM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	208	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g13300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017410350.1	1e-167	PREDICTED: putative transcription factor bHLH041
TrEMBL	A0A0L9TG89	1e-164	A0A0L9TG89_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R833	1e-166	A0A0S3R833_PHAAN; Uncharacterized protein (Fragment)
STRING	XP_007154643.1	7e-82	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4150	33	54

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]