PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g13480.1
Common NameLR48_Vigan07g140700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 230aa    MW: 25078 Da    PI: 9.9503
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g13480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.83.8e-3376132158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R RgsgGrF
  Vang11g13480.1  76 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHRHALKRVRGSGGRF 132
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.3E-3774135IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.97175135IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-2578100IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-2878132IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686080100IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.0E-25109132IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MKPFFLSNHP DTTMYNCSQV DFSHSMAHTP YPCGDPYFAS SIVAYGPQAI NQPQIIPQML  60
GLASTRIALP VELAEDGPIY VNAKQYHGIL RRRQSRAKLE AQNKLIKSRK PYLHESRHRH  120
ALKRVRGSGG RFLSAKQLES NAEHVDNNSH SGQKKDASEV ESHNSRTAEN ASITFTAISG  180
LTTMSSNSLN FRQPEHNFLG NSSNMGGSSQ CSGGLTFGGG TRQCASVGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-2376140266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116125RHRHALKRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g13480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154608.11e-151hypothetical protein PHAVU_003G133100g
TrEMBLA0A0L9UY391e-170A0A0L9UY39_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R8D31e-170A0A0S3R8D3_PHAAN; Uncharacterized protein
STRINGXP_007154608.11e-150(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-38nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]