PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g14640.1
Common NameLR48_Vigan627s008600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 192aa    MW: 20861.8 Da    PI: 9.6762
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g14640.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-072060438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    + C+ ++   + lfC+ ++ +lC  C +++H        H+
  Vang11g14640.1 20 KPCDSCKLASAALFCRPDSAFLCIACDSKIHCAnklasrHE 60
                    78******99*********************5555666676 PP
2CCT712.9e-24119163145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae
  Vang11g14640.1 119 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAE 163
                     9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.4E-101764IPR000315B-box-type zinc finger
PROSITE profilePS501199.9971764IPR000315B-box-type zinc finger
PfamPF006432.1E-51961IPR000315B-box-type zinc finger
CDDcd000213.26E-82164No hitNo description
PROSITE profilePS5101716.787119161IPR010402CCT domain
PfamPF062032.5E-18119161IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGIEKGGLKG FRSGWTVPPK PCDSCKLASA ALFCRPDSAF LCIACDSKIH CANKLASRHE  60
RVWMCEVSSS SLDVGVVPDG NTVSEMSYSF GRNSSESSGI GLSGVSGGQG ATQLCGMDRE  120
ARVLRYREKR KNRKFEKTIR YASRKAYAET RPRIKGRFAK RAEIDSDVER LYSPGAASLM  180
LDSPYGVVPS F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g14640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027920708.14e-77zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH82e-31COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A4D6L0968e-76A0A4D6L096_VIGUN; Zinc finger protein CONSTANS
STRINGXP_007154800.11e-70(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.14e-31CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]