PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g15280.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 246aa    MW: 27883.4 Da    PI: 4.9553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g15280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.6e-1463106755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI++L+
  Vang11g15280.1  63 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQHLH 106
                     57*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-1856119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.49456105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.40E-1459110No hitNo description
SMARTSM003531.8E-1562111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-1762119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1163105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
LSVTTSNFPT MENMGGEYNH FWDTFFQNQE LDSWAMDEAA MSGYYDSSSP DGGASSMASK  60
NIVSERNRRK KLNERLFALR AVVPNISKMD KASIIKDAIE YIQHLHEQEK RIEAEILDLE  120
SGKLKNPTYE FDHDLPILLR SKKKRTEQLF DSATSRNSPI EVIELRVAYM GDKTFVVSLT  180
CSKRIDTMVK LCQVFESLKL KIIAANITSF SGTLLKTVFI EADEEEKDVF ADKNSDSNFS  240
SEWSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1361121969Transcription factor MYC2
5gnj_B1e-1361121969Transcription factor MYC2
5gnj_E1e-1361121969Transcription factor MYC2
5gnj_F1e-1361121969Transcription factor MYC2
5gnj_G1e-1361121969Transcription factor MYC2
5gnj_I1e-1361121969Transcription factor MYC2
5gnj_M1e-1361121969Transcription factor MYC2
5gnj_N1e-1361121969Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g15280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932131e-180BT093213.1 Soybean clone JCVI-FLGm-17A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409618.11e-175PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV93e-82BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0S3R8B51e-173A0A0S3R8B5_PHAAN; Uncharacterized protein
STRINGXP_007154705.11e-137(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-72bHLH family protein