PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g15810.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 326aa    MW: 36090.7 Da    PI: 8.0458
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g15810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.17.8e-28142199359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK  kg+++pr+YYrC +  +Cpv+k+v+r+a+d++vv++tYeg+Hnh+
  Vang11g15810.1 142 DGCQWRKYGQKISKGNPCPRAYYRCNMGtSCPVRKQVQRCASDESVVITTYEGTHNHS 199
                     9**************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-30126201IPR003657WRKY domain
PROSITE profilePS5081128.897135201IPR003657WRKY domain
SuperFamilySSF1182905.23E-26138201IPR003657WRKY domain
SMARTSM007742.8E-31140200IPR003657WRKY domain
PfamPF031066.3E-25142198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
LSLNNLELPQ NLEQDPLNQL GLLQVELEEV KKENQNLRSM LHEISEHYAA LQNQLLLVMQ  60
QKKLSSSPNH EDMQASTLQK YLLVLNKGKN LKYIYTYDVE GKINNQVTPE EAKIIEDQAF  120
EASCKKARVS VRAPSSESLK GDGCQWRKYG QKISKGNPCP RAYYRCNMGT SCPVRKQVQR  180
CASDESVVIT TYEGTHNHSL PPPARSMAST TSAALTMFLS GSTTSSASTY YPSASSCPTV  240
TLDLTQPTKN YLKFPTSNHS QTFPLSINAY PHNYEGLPSE KDLSLVDVLS AAITRDPSLR  300
AALEAAVSSM IADSQNINNQ QVQRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-20131201877Probable WRKY transcription factor 4
2lex_A1e-20131201877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g15810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433352.10.0PREDICTED: probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0S3R9090.0A0A0S3R909_PHAAN; Uncharacterized protein
STRINGXP_007154503.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-49WRKY family protein