PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g16000.2

Common Name

LR48_Vigan01g293100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SBP

Protein Properties

Length: 1036aa MW: 114412 Da PI: 7.8581

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g16000.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.1	1.6e-40	157	234	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adl +ak+yhrrhkvC+vhska+v+lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Vang11g16000.2 157 VCQVQDCTADLGNAKDYHRRHKVCDVHSKATVALVGDVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 234 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.5E-32	153	219	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.855	155	232	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.24E-37	156	237	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.3E-29	158	231	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	8.86E-8	767	923	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.96E-8	808	927	No hit	No description
Gene3D	G3DSA:1.25.40.20	6.3E-7	809	922	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1036 aa Download sequence Send to blast
MEAEFGRKNQ YLYGPVLSGM KKAVGNGKMS LEWDLNDWKW DGDLFTAQPL NSVPSDCRSR 60 QFFPPHPEIP AKKANLGNDF SSSLINQGEG KKELEKRRRR VIGEGEGEGM NDEGGSLSLN 120 LGGQGYPFMV EGEEKSGKKT KVIGTTTAAA TISNRPVCQV QDCTADLGNA KDYHRRHKVC 180 DVHSKATVAL VGDVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDVTVVN 240 EGSHNDGRGS SYLLMSLLRI LTNLHTNGSD QTRNQDILSH LLRNLESLAA PNNDRTLASL 300 LENSKGLLNA GTPGGAHDEP NLNSNTPEAS RPSGSSIQID NGFISQDPPI SMAQCETRPT 360 NGGVENLRPP SGDGGIENLR PPSGAPFSSI SQSKGNLPCQ LTATETPLRR NNLNNVDLNN 420 VYSDVQNTNE NHKKPYPHVA SEMGSSDLPS WLQCASLKSS PPQTSRNSDS TSNQSPSGSS 480 GEAQSRTDRI VFKLFGKDPS NFPLLLRSQI LNWLSHSPTE IESYIRPGCI ILTIYLCLEK 540 SAWEELCCNL GSSLRKLLSS SNDTFWRTGW VFARVQHSVA FLYNGQVVLD VPLCLKSSHH 600 CTISCIKPLA VPASARAHFI VKGCNLSQSS TRLLCALEGK YVVHASCHDL IGEADESIQH 660 LNFSCHIPNV TGRGFIEVED HCLRSCSFPF IVAEKEVCSE ICKLENVIEA AETTNDFQIK 720 NQKMEEKTQA LHFLQEMGWL LHRSRVKVRL GPTAPIHDLF QFNRFTWLVD FSMDHGWCAV 780 MKKLLDIIFD GGVDAGEQAS IELALLDMSL LHKAVKRNNR PMVELLLRFV PVKTSDGADS 840 EVKQVDKASE RFLFRPDTVG PAGLTPLHVA ATMRGSENVL DALTDDPGMV GIEVWKSARD 900 SAGLTPNDYA CLRGYYSYVQ LVQRKTNKKG ERLHVVDIPG TVADSGIRKQ KQSGKVCSLQ 960 TEKIESTEMG SNCRVCQQKL VYGGMRTGVV YRPVLLSMVA IAAVCVCVAL LFKSSPRVYY 1020 VFQPFNWESL EYGTI*

Sequence ? help Back to Top

Protein Sequence Length: 1036 aa Download sequence Send to blast

MEAEFGRKNQ YLYGPVLSGM KKAVGNGKMS LEWDLNDWKW DGDLFTAQPL NSVPSDCRSR  60
QFFPPHPEIP AKKANLGNDF SSSLINQGEG KKELEKRRRR VIGEGEGEGM NDEGGSLSLN  120
LGGQGYPFMV EGEEKSGKKT KVIGTTTAAA TISNRPVCQV QDCTADLGNA KDYHRRHKVC  180
DVHSKATVAL VGDVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDVTVVN  240
EGSHNDGRGS SYLLMSLLRI LTNLHTNGSD QTRNQDILSH LLRNLESLAA PNNDRTLASL  300
LENSKGLLNA GTPGGAHDEP NLNSNTPEAS RPSGSSIQID NGFISQDPPI SMAQCETRPT  360
NGGVENLRPP SGDGGIENLR PPSGAPFSSI SQSKGNLPCQ LTATETPLRR NNLNNVDLNN  420
VYSDVQNTNE NHKKPYPHVA SEMGSSDLPS WLQCASLKSS PPQTSRNSDS TSNQSPSGSS  480
GEAQSRTDRI VFKLFGKDPS NFPLLLRSQI LNWLSHSPTE IESYIRPGCI ILTIYLCLEK  540
SAWEELCCNL GSSLRKLLSS SNDTFWRTGW VFARVQHSVA FLYNGQVVLD VPLCLKSSHH  600
CTISCIKPLA VPASARAHFI VKGCNLSQSS TRLLCALEGK YVVHASCHDL IGEADESIQH  660
LNFSCHIPNV TGRGFIEVED HCLRSCSFPF IVAEKEVCSE ICKLENVIEA AETTNDFQIK  720
NQKMEEKTQA LHFLQEMGWL LHRSRVKVRL GPTAPIHDLF QFNRFTWLVD FSMDHGWCAV  780
MKKLLDIIFD GGVDAGEQAS IELALLDMSL LHKAVKRNNR PMVELLLRFV PVKTSDGADS  840
EVKQVDKASE RFLFRPDTVG PAGLTPLHVA ATMRGSENVL DALTDDPGMV GIEVWKSARD  900
SAGLTPNDYA CLRGYYSYVQ LVQRKTNKKG ERLHVVDIPG TVADSGIRKQ KQSGKVCSLQ  960
TEKIESTEMG SNCRVCQQKL VYGGMRTGVV YRPVLLSMVA IAAVCVCVAL LFKSSPRVYY  1020
VFQPFNWESL EYGTI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	157	231	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	100	KRRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g16000.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017408201.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A0L9TS57	0.0	A0A0L9TS57_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R984	0.0	A0A0S3R984_PHAAN; Uncharacterized protein
STRING	XP_007154455.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]